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...aattgttgagaaccttctgtgagtgcttcgatcggatgattaccggcattttccatcttgacgtattgatatcatagtggagattgtatggttttgtcagGCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTGCGTAATACTCCCAAGGGCTTCTGTGGTCTGGAGGATCGTTGTTATTGTT
species | Physcomitrella patens |
transcript | PP1S39_322V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCCAAGCTCAATCCCCGATTGCCTCGTCCGCAACTCATCCCAATTTGG GCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTGEST: gi|18355446|gb|BJ187505.1|BJ187505
genomic: CGTCCAAGCTCAATCCCCGATTGCCTCGTCCGCAACTCATCCCAATTTGGgtacgtttag ... gttttgtcagGCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTG
EST: CGTCCAAGCTCAATCCCCGATTGCCTCGTCCGCAACTCATCCCAATTTGG GCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTGEST: gi|18342244|gb|BJ174279.1|BJ174279
genomic: CGTCCAAGCTCAATCCCCGATTGCCTCGTCCGCAACTCATCCCAATTTGGgtacgtttag ... gttttgtcagGCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTG
EST: CGTCCAAGCTCAATCCCCGATTGCCTCGTCCGCAACTCATCCCAATTTGG GCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTGEST: gi|18341882|gb|BJ173917.1|BJ173917
genomic: CGTCCAAGCTCAATCCCCGATTGCCTCGTCCGCAACTCATCCCAATTTGGgtacgtttag ... gttttgtcagGCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTG
EST: CGTCCAAGCTCAATCCCCGATTGCCTCGTCCGCAACTCATCCCAATTTGG GCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTGEST: gi|18356904|gb|BJ188963.1|BJ188963
genomic: CGTCCAAGCTCAATCCCCGATTGCCTCGTCCGCAACTCATCCCAATTTGGgtacgtttag ... gttttgtcagGCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTG
EST: CGTCCAAGCTCAATCCCCGATTGCCTCGTCCGCAACTCATCCCAATTTGG GCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTGEST: gi|18358126|gb|BJ190185.1|BJ190185
genomic: CGTCCAAGCTCAATCCCCGATTGCCTCGTCCGCAACTCATCCCAATTTGGgtacgtttag ... gttttgtcagGCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTG
EST: CGTCCAAGCTCAATCCCCGATTGCCTCGTCCGCAACTCATCCCAATTTGG GCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTG
genomic: CGTCCAAGCTCAATCCCCGATTGCCTCGTCCGCAACTCATCCCAATTTGGgtacgtttag ... gttttgtcagGCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTG
gcattttccatcttgacgtattgatatcatagtggagattgtatggttttgtcagGCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTGCGTAATACTCCCAAGGGCTTCTGTGGTCTGGAGGATCGTTGTTATTGTT
tattgat putative branch site (score: 3)
ttttgtc putative PPT
tattgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgttgagaaccttctgtgagtgcttcgatcggatgattaccggcattttccatcttgacgtattgatatcatagtggagattgtatggttttgtcagGCAATTGCACGAGGGTGATCATAGTTAAGGTGCTCTGTTGGGGCCAGTCTGCGTAATACTCCCAAGGGCTTCTGTGGTCTGGAGGATCGTTGTTATTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT