Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaaagttttggacatggcacaatagtggtattttatgagtaaagggagtgacatgcacaatttaaggttttagctgactttgatgttggtatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAGAGGTACTACTCTCGCATGACCCTGGACTTCCAGACCAACAAGAAGATTG

Basic information

species Physcomitrella patens
transcript PP1S39_286V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S39_286V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ26788 (Selaginella moellendorffii), 3'ss of exon 1
gaaaagttttggacatggcacaatagtggtattttatgagtaaagggagtgacatgcacaatttaaggttt-tagc-tgactttgatgttggtatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAGAGGTACTACTCTCGCATGACCCTGGACTTCCAGACCAACAAGAAGATTG
                                            | ||||| | ||     |   || ||| | || ||||| ||  |        |  ||||| || || || ||||| || ||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
--------------------------------------------gtgagtgtc-tggttgctgggagatttgtggcgtgactgtg-cgaaatctctgtccagGGGCGCGTTAGAACCAAGACTGTGAAGAAGGCATCGAGGGTCATCATCGAGAGGTACTACTCTCGGATGACCCTGGATTTCCAGACCAACAAGAAGATCG

upper sequence: PP1S39_286V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ26481 (Selaginella moellendorffii), 3'ss of exon 1
gaaaagttttggacatggcacaatagtggtattttatgagtaaagggagtgacatgcacaatttaaggttttagctgactttgatgttggtatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAGAGGTACTACTCTCGCATGACCCTGGACTTCCAGACCAACAAGAAGATTG
                                            | ||||| | ||     |   || |||  |  |    ||       | | |  ||||| || || || ||||| || ||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
--------------------------------------------gtgagtgtc-tggttgctgggagatttgtggcgtgactgtgcgaaatgttgtccagGGGCGCGTTAGAACCAAGACTGTGAAGAAGGCATCGAGGGTCATCATCGAGAGGTACTACTCTCGGATGACCCTGGATTTCCAGACCAACAAGAAGATCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162278494|gb|FC453956.1|FC453956
EST:     CCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162221330|gb|FC398114.1|FC398114
EST:     TCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCNGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACC-GTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67717678|gb|BJ967937.1|BJ967937
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162229302|gb|FC405389.1|FC405389
EST:     CTTATCTCCAAGCACCTGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTTATCTCCAAGCACC-GTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67717902|gb|BJ968161.1|BJ968161
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67726190|gb|BJ976449.1|BJ976449
EST:     AAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: AAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|18360278|gb|BJ192340.1|BJ192340
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162214459|gb|FC391218.1|FC391218
EST:     ATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: ATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162272762|gb|FC448778.1|FC448778
EST:     ATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: ATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|6227529|gb|AW156128.1|AW156128
EST:     CTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162272763|gb|FC448779.1|FC448779
EST:     TCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCNGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACC-GTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67724625|gb|BJ974884.1|BJ974884
EST:     CCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67726385|gb|BJ976644.1|BJ976644
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67718934|gb|BJ969193.1|BJ969193
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162228120|gb|FC404662.1|FC404662
EST:     CTTATCTCCAAGCACCGGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTTATCTCCAAGCACC-GTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162201617|gb|FC378279.1|FC378279
EST:     CCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|19789656|gb|BQ041436.1|BQ041436
EST:     CTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67717879|gb|BJ968138.1|BJ968138
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67717013|gb|BJ967272.1|BJ967272
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162272561|gb|FC447706.1|FC447706
EST:     CACTCCTCTTCCCCTTGCTTATCTCCAAGCACCNGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CACTCCTCTTCCCCTTGCTTATCTCCAAGCACC-GTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67578487|gb|BJ950654.1|BJ950654
EST:     TTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|19784012|gb|BQ040103.1|BQ040103
EST:     ACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: ACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|18359954|gb|BJ192015.1|BJ192015
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162269138|gb|FC445006.1|FC445006
EST:     TGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|208384718|gb|DC907149.1|DC907149
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67727029|gb|BJ977288.1|BJ977288
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67727279|gb|BJ977538.1|BJ977538
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162247407|gb|FC421450.1|FC421450
EST:     CTCCAAGCACCGATTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCAAGCACCG-TTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162237985|gb|FC414227.1|FC414227
EST:     CTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|18340946|gb|BJ172978.1|BJ172978
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|208384304|gb|DC903371.1|DC903371
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162201618|gb|FC378280.1|FC378280
EST:     GCTTATCTCCAAGCACCNGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: GCTTATCTCCAAGCACC-GTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|18367309|gb|BJ199391.1|BJ199391
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|37847776|gb|BJ605784.1|BJ605784
EST:     TCCACTCCTNTTNCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TCCACTCCTCTT-CCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67725546|gb|BJ975805.1|BJ975805
EST:     CTCCACTCCTTTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|18331780|gb|BJ163791.1|BJ163791
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|19786049|gb|BQ040432.1|BQ040432
EST:     AACCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162221329|gb|FC398113.1|FC398113
EST:     TCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67726408|gb|BJ976667.1|BJ976667
EST:     CTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162237984|gb|FC414226.1|FC414226
EST:     ATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: ATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|18365560|gb|BJ197637.1|BJ197637
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67717028|gb|BJ967287.1|BJ967287
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67718595|gb|BJ968854.1|BJ968854
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162278495|gb|FC453957.1|FC453957
EST:     CCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGCTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCG-TTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162249388|gb|FC424019.1|FC424019
EST:     TTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162223365|gb|FC400282.1|FC400282
EST:     TCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCNGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACC-GTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67724719|gb|BJ974978.1|BJ974978
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162253214|gb|FC429150.1|FC429150
EST:     CACTCCTCTTCCCCTTGCTTATCTCCAAGCACCNGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CACTCCTCTTCCCCTTGCTTATCTCCAAGCACC-GTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162269139|gb|FC445007.1|FC445007
EST:     TCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGCTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCG-TTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67712916|gb|BJ966365.1|BJ966365
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162211978|gb|FC388440.1|FC388440
EST:     TCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCNGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACC-GTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|208345783|gb|DC921024.1|DC921024
EST:     CCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67725531|gb|BJ975790.1|BJ975790
EST:     CAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162250649|gb|FC428240.1|FC428240
EST:     TCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162214460|gb|FC391219.1|FC391219
EST:     ATCTCCAAGCACCNGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: ATCTCCAAGCACC-GTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|67716200|gb|BJ966460.1|BJ966460
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162272560|gb|FC447705.1|FC447705
EST:     TCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|208345304|gb|DC917271.1|DC917271
EST:     TCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162250650|gb|FC428241.1|FC428241
EST:     ACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: ACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162240999|gb|FC416630.1|FC416630
EST:     TGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: TGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
EST: gi|162237861|gb|FC413944.1|FC413944
EST:     CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATG                         GGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG
genomic: CTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 91

TGAGCTAAGTCTTTCCGCTGCGCCATTGTCTGTCTTTCTCAATTCCAGAGCTCCACTCCTCTTCCCCTTGCTTATCTCCAAGCACCGTTTCGCCACCATGgttcgttttc ... tatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAGAGGTACTACTCTCGCATGACCCTGGACTTCCAGACCAACAAGAAGATTG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagtgacatgcacaatttaaggttttagctgactttgatgttggtatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAGAGGTACTACTCTCGCATGACCCTGGACTTCCAGACCAACAAGAAGATTG
              aatttaaggtttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gaaaagttttggacatggcacaatagtggtattttatgagtaaagggagtgacatgcacaatttaaggttttagctgactttgatgttggtatggaacagGGACGTGTAAGGACCAAAACCGTGAAGAAGGCCTCAAGGGTCATGATCGAGAGGTACTACTCTCGCATGACCCTGGACTTCCAGACCAACAAGAAGATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - gacatgc