1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cgatgtggtttaaatttcgtgggattagggtttggaggatcacgtattttaccactgtatgtgagcattttgataattgttgcgtgaactgtgtaagcagGTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAATCAGGGTTCGCAGAGTTGTTTATGAACAGAAG
species | Physcomitrella patens |
transcript | PP1S392_8V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGTTCGTCTTCGAAGTTGCGTTTTCCTGGATCGGGGCATGAATTGCAAG GTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAATEST: gi|18355718|gb|BJ187777.1|BJ187777
genomic: TAGTTCGTCTTCGAAGTTGCGTTTTCCTGGATCGGGGCATGAATTGCAAGgtatggtttt ... gtgtaagcagGTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAAT
EST: TAGTTCGTCTTCGAAGTTGCGTTTTCCTGGATCGGGGCATGAATTGCAAG GTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAATEST: gi|100441741|gb|BY962832.1|BY962832
genomic: TAGTTCGTCTTCGAAGTTGCGTTTTCCTGGATCGGGGCATGAATTGCAAGgtatggtttt ... gtgtaagcagGTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAAT
EST: TAGTTCGTCTTCGAAGTTGCGTTTTCCTGGATCGGGGCATGAATTGCAAG GTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAATEST: gi|18355262|gb|BJ187321.1|BJ187321
genomic: TAGTTCGTCTTCGAAGTTGCGTTTTCCTGGATCGGGGCATGAATTGCAAGgtatggtttt ... gtgtaagcagGTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAAT
EST: TAGTTCGTCTTCGAAGTTGCGTTTTCCTGGATCGGGGCATGAATTGCAAG GTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAATEST: gi|100448507|gb|CJ972806.1|CJ972806
genomic: TAGTTCGTCTTCGAAGTTGCGTTTTCCTGGATCGGGGCATGAATTGCAAGgtatggtttt ... gtgtaagcagGTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAAT
EST: TAGTTCGTCTTCGAAGTTGCGTTTTCCTGGATCGGGGCATGAATTGCAAG GTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAATEST: gi|208373500|gb|DC941083.1|DC941083
genomic: TAGTTCGTCTTCGAAGTTGCGTTTTCCTGGATCGGGGCATGAATTGCAAGgtatggtttt ... gtgtaagcagGTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAAT
EST: TAGTTCGTCTTCGAAGTTGCGTTTTCCTGGATCGGGGCATGAATTGCAAG GTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAAT
genomic: TAGTTCGTCTTCGAAGTTGCGTTTTCCTGGATCGGGGCATGAATTGCAAGgtatggtttt ... gtgtaagcagGTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAAT
attttaccactgtatgtgagcattttgataattgttgcgtgaactgtgtaagcagGTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAATCAGGGTTCGCAGAGTTGTTTATGAACAGAAG
ttttgat putative branch site (score: 5)
attttgataattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgatgtggtttaaatttcgtgggattagggtttggaggatcacgtattttaccactgtatgtgagcattttgataattgttgcgtgaactgtgtaagcagGTTGTCCAAGTGGAAGAGCAGGCGCTCTGCTTATTTTAGCAAGGAAGAAATCAGGGTTCGCAGAGTTGTTTATGAACAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA