1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgttctgtgtttaatgattcgtcgtatttttttgagtcattgaggtatgctattttaaattttctgaaaccattgttgtgattcttttctgtgacacagAGAGCAGGTGTATTTAGACTCAATCTCGGAATCGGAGAAATGAACGAATGATGCAGCTGACCAGACGGCCATCAAAAGCAATTTAAAAAGTTCTTAGCGT
species | Physcomitrella patens |
transcript | PP1S392_39V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTGGCTCTGTGGAGTCCTGTTTGAGATCTCCGTGAGGTTTTCGGAAAGG AGAGCAGGTGTATTTAGACTCAATCTCGGAATCGGAGAAATGAACGAATGAEST: gi|18365503|gb|BJ197580.1|BJ197580
genomic: TCTGGCTCTGTGGAGTCCTGTTTGAGATCTCCGTGAGGTTTTCGGAAAGGgtaggcgcat ... tgtgacacagAGAGCAGGTGTATTTAGACTCAATCTCGGAATCGGAGAAATGAACGAATGA
EST: TCTGGCTCTGTGGAGTCCTGTTTGAGATCTCCGTGAGGTTTTCGGAAAGG AGAGCAGGTGTATTTAGACTCAATCTCGGAATCGGAGAAATGAACGAATGAEST: gi|18373480|gb|BJ205058.1|BJ205058
genomic: TCTGGCTCTGTGGAGTCCTGTTTGAGATCTCCGTGAGGTTTTCGGAAAGGgtaggcgcat ... tgtgacacagAGAGCAGGTGTATTTAGACTCAATCTCGGAATCGGAGAAATGAACGAATGA
EST: TCTGGCTCTGTGGAGTCCTGTTTGAGATCTCCGTGAGGTTTTCGGAAAGG AGAGCAGGTGTATTTAGACTCAATCTCGGAATCGGAGAAATGAACGAATGAEST: gi|162202695|gb|FC379508.1|FC379508
genomic: TCTGGCTCTGTGGAGTCCTGTTTGAGATCTCCGTGAGGTTTTCGGAAAGGgtaggcgcat ... tgtgacacagAGAGCAGGTGTATTTAGACTCAATCTCGGAATCGGAGAAATGAACGAATGA
EST: TGGCTCTGTGGAGTCCTGTTTGAGATCTCCGTGAGGTTTTCGGAAAGG AGAGCAGGTGTATTTAGACTCAATCTCGGAATCGGAGAAATGAACGAATGA
genomic: TGGCTCTGTGGAGTCCTGTTTGAGATCTCCGTGAGGTTTTCGGAAAGGgtaggcgcat ... tgtgacacagAGAGCAGGTGTATTTAGACTCAATCTCGGAATCGGAGAAATGAACGAATGA
gtatgctattttaaattttctgaaaccattgttgtgattcttttctgtgacacagAGAGCAGGTGTATTTAGACTCAATCTCGGAATCGGAGAAATGAACGAATGATGCAGCTGACCAGACGGCCATCAAAAGCAATTTAAAAAGTTCTTAGCGT
ttcttttctgt CT-rich tract
tattttaaattttctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttctgtgtttaatgattcgtcgtatttttttgagtcattgaggtatgctattttaaattttctgaaaccattgttgtgattcttttctgtgacacagAGAGCAGGTGTATTTAGACTCAATCTCGGAATCGGAGAAATGAACGAATGATGCAGCTGACCAGACGGCCATCAAAAGCAATTTAAAAAGTTCTTAGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA