1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgtttaagggcttcatcttattttgtaacttgtaggtgttgagatctaggttgattcttatacgaaccagaagagcagcgtgatctcaggaagcattgccttggggagcagtttcgatttttcattttcattttctttttatttaccccttgcctccgaagcagGGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAG
species | Physcomitrella patens |
transcript | PP1S391_72V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCCTTCAAAGTCGTTCACGCGCAAGTTCGTAGGGTTTCGACATTTCAG GGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAGEST: gi|100388813|gb|BY988689.1|BY988689
genomic: CCTCCTTCAAAGTCGTTCACGCGCAAGTTCGTAGGGTTTCGACATTTCAGgtgtttaagg ... tccgaagcagGGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAG
EST: CCTCCTTCAAAGTCGTTCACGCGCAAGTTCGTAGGGTTTCGACATTTCAG GGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAGEST: gi|208394232|gb|DC933900.1|DC933900
genomic: CCTCCTTCAAAGTCGTTCACGCGCAAGTTCGTAGGGTTTCGACATTTCAGgtgtttaagg ... tccgaagcagGGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAG
EST: CCTCCTTCAAAGTCGTTCACGCGCAAGTTCGTAGGGTTTCGACATTTCAG GGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAGEST: gi|208378157|gb|DC902630.1|DC902630
genomic: CCTCCTTCAAAGTCGTTCACGCGCAAGTTCGTAGGGTTTCGACATTTCAGgtgtttaagg ... tccgaagcagGGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAG
EST: CCTCCTTCAAAGTCGTTCACGCGCAAGTTCGTAGGGTTTCGACATTTCAG GGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAGEST: gi|22133132|gb|BQ827562.1|BQ827562
genomic: CCTCCTTCAAAGTCGTTCACGCGCAAGTTCGTAGGGTTTCGACATTTCAGgtgtttaagg ... tccgaagcagGGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAG
EST: CCTCCTTCAAAGTCGTTCACGCGCAAGTTCGTAGGGTTTCGACATTTCAG GGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAG
genomic: CCTCCTTCAAAGTCGTTCACGCGCAAGTTCGTAGGGTTTCGACATTTCAGgtgtttaagg ... tccgaagcagGGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAG
agtttcgatttttcattttcattttctttttatttaccccttgcctccgaagcagGGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAG
tttttcattttcattt CT-rich tract
atttttcattttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttaagggcttcatcttattttgtaacttgtaggtgttgagatctaggttgattcttatacgaaccagaagagcagcgtgatctcaggaagcattgccttggggagcagtttcgatttttcattttcattttctttttatttaccccttgcctccgaagcagGGGTTAAAGGAGGGGGTGGTCTGCAATTTGGGTTCAAGATTACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG