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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agggactctatggaatcttcaggacttcttcgaggtgttattatcgttgtctcccgattgtcaacctaatattttatgctcaatgttgtctctgtgatagATGAAGCGGAGGAATGAGTGTGAAGAACACCACGTCGAGATGAACGGCTGGAATGGATACACGAATTCAGATCTGAGCCCTGCTCCAACTCCCACAGGTC

Basic information

species Physcomitrella patens
transcript PP1S38_356V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18372653|gb|BJ204255.1|BJ204255
EST:     TTTGTCGCAAACTATGCAACTGCGCCTCTCTTCTCTCGTCTCGTCTTGTG                         ATGAAGCGGAGGAATGAGTGTGAAGAACACCACGTCGAGATGAACGGCTGG
genomic: TTTGTCGCAAACTATGCAACTGCGCCTCTCTTCTCTCGTCTCGTCTTGTGgtgaggagga ... tctgtgatagATGAAGCGGAGGAATGAGTGTGAAGAACACCACGTCGAGATGAACGGCTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgtctcccgattgtcaacctaatattttatgctcaatgttgtctctgtgatagATGAAGCGGAGGAATGAGTGTGAAGAACACCACGTCGAGATGAACGGCTGGAATGGATACACGAATTCAGATCTGAGCCCTGCTCCAACTCCCACAGGTC
                  acctaat  putative branch site (score: 3)
                                        ttgtctct  putative PPT
                 aacctaatattttat  TA-rich tract