Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttggccctctccccctcccctttcctttcacttcgcttcgattcacttattccatgtagttgactgttgaattctcttcattttggtgtctcattcgctgtgtttcgtttcaatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG

Basic information

species Physcomitrella patens
transcript PP1S38_329V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162215586|gb|FC391665.1|FC391665
EST:     CCTCCCCGCATCGCTGTCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|67716844|gb|BJ967103.1|BJ967103
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|208346882|gb|DC905426.1|DC905426
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|208391477|gb|DC937625.1|DC937625
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|18347318|gb|BJ179364.1|BJ179364
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|208389761|gb|DC938323.1|DC938323
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|18329908|gb|BJ161914.1|BJ161914
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|19789832|gb|BQ041538.1|BQ041538
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|208380043|gb|DC914593.1|DC914593
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|162232208|gb|FC408057.1|FC408057
EST:     CGCATCGCTGTCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGT
genomic: CGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCAT-Ggtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGT
EST: gi|162239200|gb|FC416482.1|FC416482
EST:     GCCGGATAGAGCTCGCGTAGCCAGCCATGG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGT
genomic: GCCGGATAGAGCTCGCGTAGCCAGCCAT-Ggtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGT
EST: gi|18331702|gb|BJ163713.1|BJ163713
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|162266658|gb|FC442837.1|FC442837
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGT
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCAT-Ggtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGT
EST: gi|67573430|gb|BJ946254.1|BJ946254
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|18351731|gb|BJ183783.1|BJ183783
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|100430202|gb|BY959750.1|BY959750
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|208345094|gb|DC909456.1|DC909456
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|208386339|gb|DC932835.1|DC932835
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|19781204|gb|BQ039665.1|BQ039665
EST:     TCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: TCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|67717988|gb|BJ968247.1|BJ968247
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|208389889|gb|DC937720.1|DC937720
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|162273383|gb|FC449832.1|FC449832
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGT
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCAT-Ggtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGT
EST: gi|208355830|gb|DC930193.1|DC930193
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|18355260|gb|BJ187319.1|BJ187319
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|162208026|gb|FC384221.1|FC384221
EST:     CCTCCCCGCATCGCTGTCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|100431327|gb|BY960140.1|BY960140
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|208349865|gb|DC905989.1|DC905989
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|67709595|gb|BJ965411.1|BJ965411
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|18373232|gb|BJ204834.1|BJ204834
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|18351584|gb|BJ183636.1|BJ183636
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|162233764|gb|FC410030.1|FC410030
EST:     CCTCCCCGCATCGCTGTCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|100449524|gb|CJ973802.1|CJ973802
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|15728298|gb|BI740717.1|BI740717
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|162275294|gb|FC451478.1|FC451478
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGT
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCAT-Ggtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGT
EST: gi|18354041|gb|BJ186096.1|BJ186096
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|67704701|gb|BJ964934.1|BJ964934
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|208389794|gb|DC937429.1|DC937429
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|162217825|gb|FC393613.1|FC393613
EST:     CGCATCGCTGTCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGT
genomic: CGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCAT-Ggtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGT
EST: gi|67716531|gb|BJ966791.1|BJ966791
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
EST: gi|100372326|gb|BY985544.1|BY985544
EST:     CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATG                         GCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC
genomic: CCTCCCCGCATCGCTGCCACTGCCGGATAGAGCTCGCGTAGCCAGCCATGgtttggccct ... caatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgaattctcttcattttggtgtctcattcgctgtgtttcgtttcaatttccagGCGTTTATCAAACCTAACAAGACCAAGGCCTACTTCAAAAGGTTTCAGGTCAAGTACAAACGCCGTAGAG
                                     tttcgtttc  CT-rich tract
                                          tttcaattt  TA-rich tract