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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgtgggtgaaggaggagaaggaaagaagaggaggagtgtgtgagtgattgagggagggagtttgtggttaaaacccgatcggcaattttggttttcagGGATTGCGTAGGGAGTCGGGATACGACGCATTTCGAGCTATACTTGTAGAGTTTCTAGAGCGGTGTGGTGTTGGTCATGGCGTTGCAATGGAAATAACGG

Basic information

species Physcomitrella patens
transcript PP1S38_328V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162152196|gb|FC328175.1|FC328175
EST:     GGAAGACAACGAGTGGAACGAAACAAGGTTGGTCTTTGTCAGGTCCCCAG                         GGATTGCGTAGGGAGTCGGGATACGACGCATTTCGAGCTATACTTGTAGAG
genomic: GGAAGACAACGAGTGGAACGAAACAAGGTTGGTCTTTGTCAGGTCCCCAGgtgatgcatt ... tggttttcagGGATTGCGTAGGGAGTCGGGATACGACGCATTTCGAGCTATACTTGTAGAG
EST: gi|208397759|gb|DC911996.1|DC911996
EST:     GGAAGACAACGAGTGGAACGAAACAAGGTTGGTCTTTGTCAGGTCCCCAG                         GGATTGCGTAGGGAGTCGGGATACGACGCATTTCGAGCTATACTTGTAGAG
genomic: GGAAGACAACGAGTGGAACGAAACAAGGTTGGTCTTTGTCAGGTCCCCAGgtgatgcatt ... tggttttcagGGATTGCGTAGGGAGTCGGGATACGACGCATTTCGAGCTATACTTGTAGAG
EST: gi|100370853|gb|BY948549.1|BY948549
EST:     GGAAGACAACGAGTGGAACGAAACAAGGTTGGTCTTTGTCAGGTCCCCAG                         GGATTGCGTAGGGAGTCGGGATACGACGCATTTCGAGCTATACTTGTAGAG
genomic: GGAAGACAACGAGTGGAACGAAACAAGGTTGGTCTTTGTCAGGTCCCCAGgtgatgcatt ... tggttttcagGGATTGCGTAGGGAGTCGGGATACGACGCATTTCGAGCTATACTTGTAGAG
EST: gi|100440896|gb|BY962384.1|BY962384
EST:     GGAAGACAACGAGTGGAACGAAACAAGGTTGGTCTTTGTCAGGTCCCCAG                         GGATTGCGTAGGGAGTCGGGATACGACGCATTTCGAGCTATACTTGTAGAG
genomic: GGAAGACAACGAGTGGAACGAAACAAGGTTGGTCTTTGTCAGGTCCCCAGgtgatgcatt ... tggttttcagGGATTGCGTAGGGAGTCGGGATACGACGCATTTCGAGCTATACTTGTAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgattgagggagggagtttgtggttaaaacccgatcggcaattttggttttcagGGATTGCGTAGGGAGTCGGGATACGACGCATTTCGAGCTATACTTGTAGAGTTTCTAGAGCGGTGTGGTGTTGGTCATGGCGTTGCAATGGAAATAACGG
                                                ttttc  CT-rich tract
                        ttaaaa  TA-rich tract