1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggttctgacgcaggttgtcacattcttgtaataggtgttattcagcgttttaccagggtgtcggagctgaccatgcttttgtttctttgaaatacagcagCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTCGCCAATATGACGCCAAGATGGAGAATAT
species | Physcomitrella patens |
transcript | PP1S383_1V6.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGCAGEST: gi|100396855|gb|BY953861.1|BY953861
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTT---AGgttagggttt ... aatacagc
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGCAGEST: gi|67717313|gb|BJ967572.1|BJ967572
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTT---AGgttagggttt ... aatacagc
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGCAGEST: gi|67717840|gb|BJ968099.1|BJ968099
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTT---AGgttagggttt ... aatacagc
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGCAGEST: gi|208387260|gb|DC933011.1|DC933011
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTT---AGgttagggttt ... aatacagc
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAG CGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTCGCEST: gi|18346096|gb|BJ178139.1|BJ178139
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... aatacagcagCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTCGC
EST: GTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGCAGEST: gi|67702772|gb|BJ963005.1|BJ963005
genomic: GTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTT---AGgttagggttt ... aatacagc
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGCAGEST: gi|67709710|gb|BJ965526.1|BJ965526
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTT---AGgttagggttt ... aatacagc
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGCAGEST: gi|100397158|gb|BY972359.1|BY972359
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTT---AGgttagggttt ... aatacagc
EST: TTCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGCAGEST: gi|18347993|gb|BJ180040.1|BJ180040
genomic: -TCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTT---AGgttagggttt ... aatacagc
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGCAGEST: gi|18347116|gb|BJ179162.1|BJ179162
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTT---AGgttagggttt ... aatacagc
EST: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAG CGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTCGC
genomic: ATCTCGTGAAGCCTTTTACCCCACGTTTGGTGGTGTATTGCATCTTTTAGgttagggttt ... aatacagcagCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTCGC
cgttttaccagggtgtcggagctgaccatgcttttgtttctttgaaatacagcagCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTCGCCAATATGACGCCAAGATGGAGAATAT
agctgac putative branch site (score: 3)
tttgaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttctgacgcaggttgtcacattcttgtaataggtgttattcagcgttttaccagggtgtcggagctgaccatgcttttgtttctttgaaatacagcagCGAAGTAGTATGGCTGGATCTGCACCCGAAGGGTCTCAGTTCGATGCTCGCCAATATGACGCCAAGATGGAGAATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - cacattc