1 5' 3' | 2 5' 3' | 3 5' 3' |
...atttcaatgtggagttttggttccggcagtcttgtgtggaattgttgtgggagtgacgatagctggaccctgatgagtctgtgtgggtgagtggcttcagATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGGAACCATTGTGCACGGTACTATCACAG
species | Physcomitrella patens |
transcript | PP1S37_118V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAAGCTTAGCAGCAGGTTCAGCAAGTATCAGTCACAATGAAGCTCGTCAG ATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGGEST: gi|208364908|gb|DC947050.1|DC947050
genomic: TAAGCTTAGCAGCAGGTTCAGCAAGTATCAGTCACAATGAAGCTCGTCAGgtgccgctcc ... gtggcttcagATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGG
EST: TAAGCTTAGCAGCAGGTTCAGCAAGTATCAGTCACAATGAAGCTCGTCAG ATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGGEST: gi|18345230|gb|BJ177271.1|BJ177271
genomic: TAAGCTTAGCAGCAGGTTCAGCAAGTATCAGTCACAATGAAGCTCGTCAGgtgccgctcc ... gtggcttcagATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGG
EST: TAAGCTTAGCAGCAGGTTCAGCAAGTATCAGTCACAATGAAGCTCGTCAG ATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGGEST: gi|208375129|gb|DC956469.1|DC956469
genomic: TAAGCTTAGCAGCAGGTTCAGCAAGTATCAGTCACAATGAAGCTCGTCAGgtgccgctcc ... gtggcttcagATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGG
EST: TAAGCTTAGCAGCAGGTTCAGCAAGTATCAGTCACAATGAAGCTCGTCAG ATTTTTGATGAAANTGAACAATGAGACGGTATNGATAGAGCTCAAGAATGGEST: gi|208369557|gb|DC932539.1|DC932539
genomic: TAAGCTTAGCAGCAGGTTCAGCAAGTATCAGTCACAATGAAGCTCGTCAGgtgccgctcc ... gtggcttcagATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGG
EST: TAAGCTTAGCAGCAGGTTCAGCAAGTATCAGTCACAATGAAGCTCGTCAG ATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGGEST: gi|208388874|gb|DC932902.1|DC932902
genomic: TAAGCTTAGCAGCAGGTTCAGCAAGTATCAGTCACAATGAAGCTCGTCAGgtgccgctcc ... gtggcttcagATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGG
EST: TAAGCTTAGCAGCAGGTTCAGCAAGTATCAGTCACAATGAANCTCGTCAG ATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGG
genomic: TAAGCTTAGCAGCAGGTTCAGCAAGTATCAGTCACAATGAAGCTCGTCAGgtgccgctcc ... gtggcttcagATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGG
tgtgggagtgacgatagctggaccctgatgagtctgtgtgggtgagtggcttcagATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGGAACCATTGTGCACGGTACTATCACAG
ccctgat putative branch site (score: 6)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcaatgtggagttttggttccggcagtcttgtgtggaattgttgtgggagtgacgatagctggaccctgatgagtctgtgtgggtgagtggcttcagATTTTTGATGAAACTGAACAATGAGACGGTATCGATAGAGCTCAAGAATGGAACCATTGTGCACGGTACTATCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA