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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaatttgatttgttttataaacatgcatggcattaatttgcgtctaggtatttagtttctgtaattaatgtagcgcgctttgcttgttttgtattacagGGGGCGCTCACTTGTACAA

Basic information

species Physcomitrella patens
transcript PP1S378_9V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18360157|gb|BJ192219.1|BJ192219
EST:     TAAGCAATCATGTATCGCGCGGCGGCAGCTTTGGCGTCCCGAGTTAACAG                         GGGGCGCTCACTTGTACAA
genomic: TAAGCAATCATGTATCGCGCGGCGGCAGCTTTGGCGTCCCGAGTTAACAGgtgttaatct ... tgtattacagGGGGCGCTCACTTGTACAA
EST: gi|162199529|gb|FC373181.1|FC373181
EST:     TAAGCAATCATGTATCGCGCGGCGGCAGCTTTGGCGTCCCGAGTTAACAG                         GGGGCGCTCACTTGTACAA
genomic: TAAGCAATCATGTATCGCGCGGCGGCAGCTTTGGCGTCCCGAGTTAACAGgtgttaatct ... tgtattacagGGGGCGCTCACTTGTACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggtatttagtttctgtaattaatgtagcgcgctttgcttgttttgtattacagGGGGCGCTCACTTGTACAA
                  aattaat  putative branch site (score: 3)
 cttgtttt  putative PPT
 tttctgtaattaat  TA-rich tract