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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatccacctaccaggactaggatcagttgtaatgttcgcctcccttgggataattcatgaaagaagacaaattgtatttcgtgcttaggtgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG

Basic information

species Physcomitrella patens
transcript PP1S372_38V6.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S372_38V6.3 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 1
gaatccacctaccaggactaggatcagttgtaatgttcgcctcccttgggataattcatgaaagaagacaaattgtatttcgtgcttaggtgttgcaaagTGGTTGAGCAGGTCCAAACTA-AACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG
                   |   |||  |  | |||||   | |      ||| |  |  |||  |  |  ||       ||   |  | |  |    |   |          |    ||  |   |||||||||||||||||  |||||||| | || |||||||||||| |||||||||| |||
-------------gcatgcacattcaaatccactgttccttttcaaccacatagtgaaccaaaacactctcatcactgagcgatatatgattctatccatatgccacttgcagCAGTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S372_38V6.3 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 2
gaatccacctaccaggactaggatcagttgtaatgttcgcctcccttgggataattcatgaaagaagacaaattgtatttcgtgcttaggtgttgcaaagTGGTTGA--GCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG
            ||   | ||  |   || | ||   |   |        |  | |      |   |      | |  ||| |    |  ||   ||  |  | |    |||| ||     | |   |||||||||||||||||  |||||||| | || |||||||||||| |||||||||| |||
------------caaatccagtcttccttttcattcacatgttgaactaaaacactttcatcactggttggtatttgattc-tatccatatgccacattgccgcttgctgcagTTCT----TTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S372_38V6.3 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G110378_T01 (Zea mays), 3'ss of exon 1
gaatccacctaccaggactaggatcagttgtaatgttcgcctcccttgggataattcatgaaagaagacaaattgtatttcgtgct---taggtgttgcaaagTGGTTGA--GCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG
                       ||     |    ||| | |   |||   |||  ||              | ||||||  | ||    |  ||   ||  |  | |    |||| ||     | |   |||||||||||||||||  |||||||| | || |||||||||||| |||||||||| |||
----------------------gtcttccttttcattcacatg--ttgaactaaaacactttcatcactggttggtatttgattctatccatatgccacattgccgcttgctgcagttct----ttagAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S372_38V6.3 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G067985_T12 (Zea mays), 3'ss of exon 1
gaatccacctaccaggactaggatcagttgtaatgttcgcctcccttgggataattcatgaaagaagacaaattgtatttcgtgcttaggtgttgcaaagTGGTTGAGCAGGTCCAAACTA-AACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG
                   |   |||  |  | |||||   | |      ||| |  |  |||  |  |  ||       ||   |  | |  |    |   |          |    ||  |   |||||||||||||||||  |||||||| | || |||||||||||| |||||||||| |||
----------------tgcacattcaaatccactgttccttttcaaccacatagtgaaccaaaacactctcatcactgagcgatatatgattctatccatatgccacttgcagcagTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S372_38V6.3 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G067985_T09 (Zea mays), 3'ss of exon 1
gaatccacctaccaggactaggatcagttgtaatgttcgcctcccttgggataattcatgaaagaagacaaattgtatttcgtgcttaggtgttgcaaagTGGTTGAGCAGGTCCAAACTA-AACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG
                        ||  |  | |||||   | |      ||| |  |  |||  |  |  ||       ||   |  | |  |    |   |          |    ||  |   |||||||||||||||||  |||||||| | || |||||||||||| |||||||||| |||
------------------------caaatccactgttccttttcaaccacatagtgaaccaaaacactctcatcactgagcgatatatgattctatccatatgccacttgcagcagttctgtagAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACTGGAATGGTCAAG

upper sequence: PP1S372_38V6.3 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G104017_T04 (Zea mays), 3'ss of exon 1
gaatccacctaccaggactag-gatcagttgtaatgttcgcctcccttgggataattcatgaaagaagacaaattgtatttcgtgcttaggtgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG
  || |  ||  ||   | || | ||  ||  |||       |    |   | | ||  | |     |||  |||  |||   | | || | |   |       |  ||||| ||   |  ||    ||||||||||||||||  |||||||| | || |||||||||||| | |||||||| |||
--atgcgtct--caaatccagtgctccttttcaatcacatattgaactaaaacactt--tcatcattgactcatttgattctatccatatgcgccacc------tgcagcagTTCTGTAGAAA----TGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG

upper sequence: PP1S372_38V6.3 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G053284_T01 (Zea mays), 3'ss of exon 1
gaatccacctaccaggactaggatcagttgtaatgttcgcctcccttgggataattcatgaaagaagacaaattgtatttcgtgcttaggtgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG
         |||||   | ||   | |  | | || |  | |   | ||| | |            ||||  ||     |         || | |||   || |   ||||  |   ||| |   |||||||| |   |||| ||||||||  | ||||||||||||||| ||||||||||||||
-----ggtttaccattgc-agcggcggcggca-tgctt-cttttgtggggtttacctgactccatggacactttaacgattaacaccgagtatagcattctgct---gcagAAC---ACTGAGGAATGGCTGAAG---AGGATGTCCAGCCCCTTGTGTGCGACAATGGCACTGGAATGGTTAAG

upper sequence: PP1S372_38V6.3 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G067985_T04 (Zea mays), 3'ss of exon 1
gaatccacctaccaggactaggatcagttgtaatgttcgcctcccttgggataattcatgaaagaagacaaattgtatttcgtgcttaggtgttgcaaagTGGTTGAGCAGGTCCAAACTA-AACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG
                   |   |||  |  | ||||    | |  |   ||| |  |  |||  |  |  ||        |   || | | ||    |   |          |    ||  |   |||||||||||||||||  |||||||| | || |||||||||||| | |||||||| |||
----------------tgcacattcaaatccagtgtttcttttcaatcacatagtgaactaaaacactctcatcactcagtgatatttgattttatccacatgccacttgcagcagTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG

upper sequence: PP1S372_38V6.3 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G067985_T02 (Zea mays), 3'ss of exon 1
gaatccacctaccaggactaggatcagttgtaatgttcgcctcccttgggataattcatgaaagaagacaaattgtatttcgtgcttaggtgttgcaaagTGGTTGAGCAGGTCCAAACTA-AACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG
          ||| | ||     |||  |  | ||||    | |  |   ||| |  |  |||  |  |  ||        |   || | | ||    |   |          |    ||  |   |||||||||||||||||  |||||||| | || |||||||||||| | |||||||| |||
----------acctgcac---attcaaatccagtgtttcttttcaatcacatagtgaactaaaacactctcatcactcagtgatatttgattttatccacatgccacttgcagCAGTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG

upper sequence: PP1S372_38V6.3 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G104017_T03 (Zea mays), 3'ss of exon 1
gaatccacctaccaggactaggatcagttgtaatgttcgcctcccttgggataattcatgaaagaagacaaattgtatttcgtgcttaggtgttgcaaagTGGTTGAGCAGGTCCAAACTA--AACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG
             || |   |  |||  |  | || ||   | |  |   ||| |  |  |||  |     ||  | |  |    ||   | |  | |  ||    | | |   ||       |   |||||||||||||||||  |||||||| | || |||||||||||| | |||||||| |||
-------------agcatgcgtctcaaatccagtgctccttttcaatcacatattgaactaaaacactttcatcat-tgactcatttgattctatccatatgcgccacctgcagCAGTTCTGTAGAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG

upper sequence: PP1S372_38V6.3 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 1
gaatccacctaccaggactaggatcagttgtaatgttcgcctcccttgggataattcatgaaagaagacaaattgtatttcgtgcttaggtgttgcaaagTGGTTGAGCAGGTCCAAACTA--AACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG
                        ||  |  | || ||   | |  |   ||| |  |  |||  |     ||  | |  |    ||   | |  | |  ||    | | |   ||       |   |||||||||||||||||  |||||||| | || |||||||||||| | |||||||| |||
------------------------caaatccagtgctccttttcaatcacatattgaactaaaacactttcatcat-tgactcatttgattctatccatatgcgccacctgcagcagttctgtagAAATGGCTGATGGTGAGGACATCCAGCCTCTTGTCTGCGACAATGGCACCGGAATGGTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100357187|gb|BY983737.1|BY983737
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100418766|gb|BY975729.1|BY975729
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|162250558|gb|FC428461.1|FC428461
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100424068|gb|BY976649.1|BY976649
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|162173189|gb|FC349243.1|FC349243
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100359852|gb|BY947154.1|BY947154
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100384225|gb|BY969356.1|BY969356
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|67709621|gb|BJ965437.1|BJ965437
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100423472|gb|BY958283.1|BY958283
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|67709704|gb|BJ965520.1|BJ965520
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100395288|gb|BY953662.1|BY953662
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100380171|gb|BY968883.1|BY968883
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         TGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100387494|gb|BY988365.1|BY988365
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100364063|gb|BY966307.1|BY966307
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208375538|gb|DC937025.1|DC937025
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|162156866|gb|FC333020.1|FC333020
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100426497|gb|BY958928.1|BY958928
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|67717409|gb|BJ967668.1|BJ967668
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208347631|gb|DC912862.1|DC912862
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208380056|gb|DC914606.1|DC914606
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100388294|gb|BY951896.1|BY951896
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208382109|gb|DC903111.1|DC903111
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100389258|gb|BY971008.1|BY971008
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100354831|gb|BY983587.1|BY983587
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208363768|gb|DC931092.1|DC931092
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208362443|gb|DC930976.1|DC930976
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100441073|gb|BY980694.1|BY980694
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|67718576|gb|BJ968835.1|BJ968835
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|67718781|gb|BJ969040.1|BJ969040
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100417941|gb|BY993260.1|BY993260
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGGTGTTGCAAAG               
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A----TT-C--AGgtaatacctg ...
EST: gi|100416011|gb|BY957034.1|BY957034
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208355826|gb|DC930189.1|DC930189
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208380404|gb|DC907729.1|DC907729
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100379823|gb|BY949962.1|BY949962
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100403799|gb|BY955107.1|BY955107
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100418101|gb|BY993336.1|BY993336
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTACTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100398101|gb|BY954088.1|BY954088
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100362829|gb|BY947549.1|BY947549
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|67717930|gb|BJ968189.1|BJ968189
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208368449|gb|DC939926.1|DC939926
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|100409313|gb|BY991949.1|BY991949
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         TGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208356473|gb|DC938626.1|DC938626
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208376248|gb|DC940960.1|DC940960
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208373713|gb|DC936540.1|DC936540
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|208377765|gb|DC940877.1|DC940877
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAG                         TGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
EST: gi|67719714|gb|BJ969973.1|BJ969973
EST:     CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCC--TTT-TT-A-                         ---TT---CAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC
genomic: CAGGCGCTTCTGAGCTCCATTTTTGCTTCTGCTCCGGCCTTTTTATTCAGgtaatacctg ... tgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgggataattcatgaaagaagacaaattgtatttcgtgcttaggtgttgcaaagTGGTTGAGCAGGTCCAAACTAAACCATGGCTGATGGTGAGGAAGTCCAGCCTTTGGTGTGCGACAATGGCTCTGGAATGGTTAAG
                        aaattgtattt  TA-rich tract