1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attgtttcgtgtttttctttcttctttttaattttttttctttgtggctgtatgtctcatacattgacatctttggtctgttcttgctcttgtcttgcagACGTGGAAGAGTTTTACCGCCAATGTGATCCAG
species | Physcomitrella patens |
transcript | PP1S371_53V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAGGACTTCAAAGGGCGGCGATTGGGAATGCTGAAGGCTCTTACTGCCG ACGTGGAAGAGTTTTACCGCCAATGTGATCCAGEST: gi|67570731|gb|BJ943555.1|BJ943555
genomic: CAAGGACTTCAAAGGGCGGCGATTGGGAATGCTGAAGGCTCTTACTGCCGgtaggtccac ... tgtcttgcagACGTGGAAGAGTTTTACCGCCAATGTGATCCAG
EST: CAAGGACTTCAAAGGGCGGCGATTGGGAATGCTGAAGGCTCTTACTGCCG ACGTGGAAGAGTTTTACCGCCAATGTGATCCAGEST: gi|100448621|gb|CJ972920.1|CJ972920
genomic: CAAGGACTTCAAAGGGCGGCGATTGGGAATGCTGAAGGCTCTTACTGCCGgtaggtccac ... tgtcttgcagACGTGGAAGAGTTTTACCGCCAATGTGATCCAG
EST: CAAGGACTTCAAAGGGCGGCGATTGGGAATGCTGAAGGCTCTTACTGCCG ACGTGGAAGAGTTTTACCGCCAATGTGATCCAG
genomic: CAAGGACTTCAAAGGGCGGCGATTGGGAATGCTGAAGGCTCTTACTGCCGgtaggtccac ... tgtcttgcagACGTGGAAGAGTTTTACCGCCAATGTGATCCAG
ggctgtatgtctcatacattgacatctttggtctgttcttgctcttgtcttgcagACGTGGAAGAGTTTTACCGCCAATGTGATCCAG
cattgac putative branch site (score: 1)
ttcttgctcttgtctt putative PPT
atacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtttcgtgtttttctttcttctttttaattttttttctttgtggctgtatgtctcatacattgacatctttggtctgttcttgctcttgtcttgcagACGTGGAAGAGTTTTACCGCCAATGTGATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA