1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagattggagttgggtttttgttgggcgcaagaatttttggaatttgggggagaagtgttgggacctctgtattagggtttaggggtttgcatgctgtgtttttttggggagctgagagtgaagttgtggtctctgcagCCGGGAAGACTGACTATCGTGCGAGGATTCGCTTGACCACCCAAGATAAGAACAAGTACAACACCCCCAAGTACCGTTTCGTTGTGCGGTTC
species | Physcomitrella patens |
transcript | PP1S371_31V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCNAGTCNAGTACAAACGCCGGAGAG CCGGGAAGACTGACTATCGTGCGAGGATTCGCTTGACCACCCAAGATAAGAEST: gi|67577808|gb|BJ949975.1|BJ949975
genomic: TTTCAAGTCAAGTACAAACGCCGGAGAGgtgagattgg ... gtctctgcagCCGGGAAGACTGACTATCGTGCGAGGATTCGCTTGACCACCCAAGATAAGA
EST: GACTAAGGCTTACTTCAAGAGGTTTCAAGTCAAGTACAAACGCCGGAGAG CCGGGAAGACTGACTATCGTGCGAGGATTCGCTTGACCACCCAAGATAAGAEST: gi|67508343|gb|BJ941211.1|BJ941211
genomic: GACTAAGGCTTACTTCAAGAGGTTTCAAGTCAAGTACAAACGCCGGAGAGgtgagattgg ... gtctctgcagCCGGGAAGACTGACTATCGTGCGAGGATTCGCTTGACCACCCAAGATAAGA
EST: GACTAAGGCTTACTTCAAGAGGTTTCAAGTCAAGTACAAACGCCGGAGAG CCGGGAAGACTGACTATCGTGCGAGGATTCGCTTGACCACCCAAGATAAGAEST: gi|67573313|gb|BJ946137.1|BJ946137
genomic: GACTAAGGCTTACTTCAAGAGGTTTCAAGTCAAGTACAAACGCCGGAGAGgtgagattgg ... gtctctgcagCCGGGAAGACTGACTATCGTGCGAGGATTCGCTTGACCACCCAAGATAAGA
EST: GACTAAGGCTTACTTCAAGAGGTTTCAAGTCAAGTACAAACGCCGGAGAG CCGGGAAGACTGACTATCGTGCGAGGATTCGCTTGACCACCCAAGATAAGA
genomic: GACTAAGGCTTACTTCAAGAGGTTTCAAGTCAAGTACAAACGCCGGAGAGgtgagattgg ... gtctctgcagCCGGGAAGACTGACTATCGTGCGAGGATTCGCTTGACCACCCAAGATAAGA
ggtttgcatgctgtgtttttttggggagctgagagtgaagttgtggtctctgcagCCGGGAAGACTGACTATCGTGCGAGGATTCGCTTGACCACCCAAGATAAGAACAAGTACAACACCCCCAAGTACCGTTTCGTTGTGCGGTTC
tctctgc CT-rich tract
tgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagattggagttgggtttttgttgggcgcaagaatttttggaatttgggggagaagtgttgggacctctgtattagggtttaggggtttgcatgctgtgtttttttggggagctgagagtgaagttgtggtctctgcagCCGGGAAGACTGACTATCGTGCGAGGATTCGCTTGACCACCCAAGATAAGAACAAGTACAACACCCCCAAGTACCGTTTCGTTGTGCGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC