1 5' 3' |
...gtcgaatgcagtcttggtgcgagaccgtcgggcctccagactgggctgtgatgcaggggaggtttgtaacggtggagtgtgatgtgggtttgatgtgcagGCTGGATGTGTACATATACGACTATCTGATAAAGAGGAATCTGCAAGCATCGGCGAAAGCGTTTCTGAACGAGGGCAAAGTGTCGTCCGACCCCGTTGGT
species | Physcomitrella patens |
transcript | PP1S371_13V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ctgtgatgcaggggaggtttgtaacggtggagtgtgatgtgggtttgatgtgcagGCTGGATGTGTACATATACGACTATCTGATAAAGAGGAATCTGCAAGCATCGGCGAAAGCGTTTCTGAACGAGGGCAAAGTGTCGTCCGACCCCGTTGGT
tttgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgaatgcagtcttggtgcgagaccgtcgggcctccagactgggctgtgatgcaggggaggtttgtaacggtggagtgtgatgtgggtttgatgtgcagGCTGGATGTGTACATATACGACTATCTGATAAAGAGGAATCTGCAAGCATCGGCGAAAGCGTTTCTGAACGAGGGCAAAGTGTCGTCCGACCCCGTTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - tgatgca