1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgggttgcttcactgtcagttctcctcggacggattttaggatggaggtgttttgaattatgtttccttactcttggattatggtctcttcttctttgttgggctggtgcgcgttcttgtttacagtccttcactttcttaaattttgcattctgattcgatatgaacagGTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTCCGATTCTGCTGGAGGCCAGAGATGTGCTCGGAGGAAAG
species | Physcomitrella patens |
transcript | PP1S369_27V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTG GTTTGGCTGGACEST: gi|162166430|gb|FC342412.1|FC342412
genomic: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTGgtgggttgct ... atatgaacagGTTTGGCTGGAC
EST: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTG GTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTCEST: gi|162267104|gb|FC443335.1|FC443335
genomic: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTGgtgggttgct ... atatgaacagGTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTC
EST: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTG GTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTCEST: gi|162202348|gb|FC378667.1|FC378667
genomic: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTGgtgggttgct ... atatgaacagGTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTC
EST: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTG GTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTCEST: gi|162182137|gb|FC358568.1|FC358568
genomic: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTGgtgggttgct ... atatgaacagGTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTC
EST: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTG GTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTCEST: gi|18325461|gb|BJ157458.1|BJ157458
genomic: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTGgtgggttgct ... atatgaacagGTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTC
EST: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTG GTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTCEST: gi|162167174|gb|FC343650.1|FC343650
genomic: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTGgtgggttgct ... atatgaacagGTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTC
EST: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTG GTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTCEST: gi|18327345|gb|BJ159347.1|BJ159347
genomic: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTGgtgggttgct ... atatgaacagGTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTC
EST: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTG GTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTC
genomic: CGACTCCCCACGCCCCGAGAAACCTCTCAGGGTTGTCATTGCCGGAGCTGgtgggttgct ... atatgaacagGTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTC
cttgtttacagtccttcactttcttaaattttgcattctgattcgatatgaacagGTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTCCGATTCTGCTGGAGGCCAGAGATGTGCTCGGAGGAAAG
ttctgat putative branch site (score: 12)
actttcttaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttgcttcactgtcagttctcctcggacggattttaggatggaggtgttttgaattatgtttccttactcttggattatggtctcttcttctttgttgggctggtgcgcgttcttgtttacagtccttcactttcttaaattttgcattctgattcgatatgaacagGTTTGGCTGGACTTAGCACCGCTAAGTACATTGCCGATGCTGGCCACATTCCGATTCTGCTGGAGGCCAGAGATGTGCTCGGAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA