1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgcgctggtttgatccagactttgctctgtttgtggggtgcctctcattgtgtcacattccttgttgctgctgcacgaatggacgtggtattcaacgtgggattggtgcatgatgggcaatgacaatgtagGGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTGAACCGAGGGTGTGTACCTTCGAAAGCTCTCTTGGCTGTGAGTGGACGGA
species | Physcomitrella patens |
transcript | PP1S35_94V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGCTGGAGTTGGAGGGCACGGCGCCGCTCTTCATGCTGTTGAGAAG GGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTGEST: gi|162167619|gb|FC343751.1|FC343751
genomic: TTGGTGCTGGAGTTGGAGGGCACGGCGCCGCTCTTCATGCTGTTGAGAAGgtgcgctggt ... gacaatgtagGGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTG
EST: TTGGTGCTGGAGTTGGAGGGCACGGCGCCGCCCTTCATGCTGTTGAGAAG GGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTGEST: gi|162166909|gb|FC343294.1|FC343294
genomic: TTGGTGCTGGAGTTGGAGGGCACGGCGCCGCTCTTCATGCTGTTGAGAAGgtgcgctggt ... gacaatgtagGGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTG
EST: TTGGTGCTGGAGTTGGAGGGCACGGCGCCGCCCTTCATGCTGTTGAGAAG GGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTGEST: gi|100420741|gb|BY993485.1|BY993485
genomic: TTGGTGCTGGAGTTGGAGGGCACGGCGCCGCTCTTCATGCTGTTGAGAAGgtgcgctggt ... gacaatgtagGGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTG
EST: TTGGTGCTGGAGTTGGAGGGCACGGCGCCGCTCTTCATGCTGTTGAGAAG GGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTGEST: gi|162154175|gb|FC330618.1|FC330618
genomic: TTGGTGCTGGAGTTGGAGGGCACGGCGCCGCTCTTCATGCTGTTGAGAAGgtgcgctggt ... gacaatgtagGGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTG
EST: TTGGTGCTGGAGTTGGAGGGCACGGCGCCGCCCTTCATGCTGTTGAGAAG GGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTGEST: gi|162170369|gb|FC346774.1|FC346774
genomic: TTGGTGCTGGAGTTGGAGGGCACGGCGCCGCTCTTCATGCTGTTGAGAAGgtgcgctggt ... gacaatgtagGGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTG
EST: TTGGTGCTGGAGTTGGAGGGCACGGCGCCGCCCTTCATGCTGTTGAGAAG GGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTGEST: gi|162189578|gb|FC365800.1|FC365800
genomic: TTGGTGCTGGAGTTGGAGGGCACGGCGCCGCTCTTCATGCTGTTGAGAAGgtgcgctggt ... gacaatgtagGGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTG
EST: GTTGGAGGGCACGGCGCCGCCCTTCATGCTGTTGAGAAG GGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTG
genomic: GTTGGAGGGCACGGCGCCGCTCTTCATGCTGTTGAGAAGgtgcgctggt ... gacaatgtagGGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTG
gaatggacgtggtattcaacgtgggattggtgcatgatgggcaatgacaatgtagGGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTGAACCGAGGGTGTGTACCTTCGAAAGCTCTCTTGGCTGTGAGTGGACGGA
tattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgctggtttgatccagactttgctctgtttgtggggtgcctctcattgtgtcacattccttgttgctgctgcacgaatggacgtggtattcaacgtgggattggtgcatgatgggcaatgacaatgtagGGGTTGAAGACGGCAATCATCGAGGGAGATGTAGTGGGCGGAACTTGCGTGAACCGAGGGTGTGTACCTTCGAAAGCTCTCTTGGCTGTGAGTGGACGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA