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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaagtgatagccgttgactttatcctgtggacattttttaagcggttacggatcaccacttataaatggtcttgagcagtgtttatccttttgttgcagAGGGAACGGCAAGCACTTGTACTGGACACAGATGATCCTGAAGACAAGATTTTGCCTAGGAAGCCTGTAACACAATATCAATCATGGCGTATAG

Basic information

species Physcomitrella patens
transcript PP1S35_249V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162159524|gb|FC336313.1|FC336313
EST:     GCATAAGCATTAATTTTGGGACGAATTTGCTCAAGCTTGGACACAATCAG                         AGGGAACGGCAAGCACTTGTACTGGACACAGATGATCCTGAAGACAAGATT
genomic: GCATAAGCATTAATTTTGGGACGAATTTGCTCAAGCTTGGACACAATCAGgtagcgctga ... tttgttgcagAGGGAACGGCAAGCACTTGTACTGGACACAGATGATCCTGAAGACAAGATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacggatcaccacttataaatggtcttgagcagtgtttatccttttgttgcagAGGGAACGGCAAGCACTTGTACTGGACACAGATGATCCTGAAGACAAGATTTTGCCTAGGAAGCCTGTAACACAATATCAATCATGGCGTATAG
                                     tttatccttttgtt  CT-rich tract
             acttataaat  TA-rich tract