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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctccggtttggagttttcaaacacattacccgagtgcatttttgagttgattattttgtatgtttgaatttaaagttcatttcctgcgtctatgtgcagAATTCCTCCTGATTGGGTGACATCTCCTCGCACTGCATGCAACTGCAAGCGCGCTCTTCATCAATGTATTGAACTGAATGCTTTAGGAGGTCTTCCTATT

Basic information

species Physcomitrella patens
transcript PP1S35_209V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18357649|gb|BJ189708.1|BJ189708
EST:     GCATTTAAGCAGCTCGGGACGTTCCCCGCGGGTGATTCTCATTTTCCGTG                         AATTCCTCCTGATTGGGTGACATCTCCTCGCACTGCATGCAACTGCAAGCG
genomic: GCATTTAAGCAGCTCGGGACGTTCCCCGCGGGTGATTCTCATTTTCCGTGgtgagttgct ... ctatgtgcagAATTCCTCCTGATTGGGTGACATCTCCTCGCACTGCATGCAACTGCAAGCG
EST: gi|18343001|gb|BJ175037.1|BJ175037
EST:     GCATTTAAGCAGCTCGGGACGTTCCCCGCGGGTGATTCTCATTTTCCGTG                         AATTCCTCCTGATTGGGTGACATCTCCTCGCACTGCATGCAACTGCAAGCG
genomic: GCATTTAAGCAGCTCGGGACGTTCCCCGCGGGTGATTCTCATTTTCCGTGgtgagttgct ... ctatgtgcagAATTCCTCCTGATTGGGTGACATCTCCTCGCACTGCATGCAACTGCAAGCG
EST: gi|18350611|gb|BJ182662.1|BJ182662
EST:     GCATTTAAGCAGCTCGGGACGTTCCCCGCGGGTGATTCTCATTTTCCGTG                         AATTCCTCCTGATTGGGTGACATCTCCTCGCACTGCATGCAACTGCAAGCG
genomic: GCATTTAAGCAGCTCGGGACGTTCCCCGCGGGTGATTCTCATTTTCCGTGgtgagttgct ... ctatgtgcagAATTCCTCCTGATTGGGTGACATCTCCTCGCACTGCATGCAACTGCAAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgattattttgtatgtttgaatttaaagttcatttcctgcgtctatgtgcagAATTCCTCCTGATTGGGTGACATCTCCTCGCACTGCATGCAACTGCAAGCGCGCTCTTCATCAATGTATTGAACTGAATGCTTTAGGAGGTCTTCCTATT
 agttgat  putative branch site (score: 5)
     attattttgtatgttt  TA-rich tract