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1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctctcctgtggtcacaaactgatcgttaaccttagaattctttaaagcatgttgaatgaccatttaagttagctcaatatgttttttgtggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATGCAGCCGTTGGCCTACAATATCAAGACTAAGAACATGGCTGGATTTGCAA

Basic information

species Physcomitrella patens
transcript PP1S359_29V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S359_29V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ23879 (Selaginella moellendorffii), 3'ss of exon 1
gctctcctgtggtcacaaactgatcgttaaccttagaattctttaaagcatgttgaatgaccatttaagttagctcaatatgttttttgtggat----gtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATGCAGCCGTTGGCCTACAATATCAAGACTAAGAACATGGCTGGATTTGCAA--
|   |  | |   |     || |  |||     ||   |   || | || ||||   |  | ||||    ||      | |  |  ||  | ||        ||   ||||||||||| |||||| ||||||| ||||| ||||||||||| ||   |||| | || |||   |||   |  |||||||   | ||      ||  
gagatttttttacctttctctcaaagtt----ctatcttctcttgatgcttgttctcttgcgattttttctactcgtttcttctcattacgcattgtcacacagATGATCATCGCTGGTGGTGGAATGGACGTGGAGATCTTCAACAGGGGAATCATGCCGCTAGCTTACGGGATCCTCAAGAAGAACAC--CCGGGGCGAGAAGA

upper sequence: PP1S359_29V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ10013 (Selaginella moellendorffii), 3'ss of exon 1
gctctcctgtggtcacaaactgatcgttaaccttagaattctttaaagcatgttgaatgaccatttaagttagctcaatatgttttttgtggat----gtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATGCAGCCGTTGGCCTACAATATCAAGACTAAGAACATGGCTGGATTTGCAA--
|   |  | |   |     || | ||||     |||  |   || | || ||||   |  | | ||    ||      | |  |  ||  | ||        ||   ||||||||||| |||||| ||||||| ||||| ||||||||||| ||   |||| | || |||   |||   |  |||||||   | ||      ||  
gagattttcttacctttctctcaacgtt----ctagcttctcttgatgcttgttctcttgcgaatttttctactcgtttcttctcattacgcattgtcacacagATGATCATCGCTGGTGGTGGAATGGACGTGGAGATCTTCAACAGGGGAATCATGCCGCTAGCTTACGGGATCCTCAAGAAGAACAC--CCGGGGCGAGAAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162220790|gb|FC395559.1|FC395559
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|67701550|gb|BJ961783.1|BJ961783
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|37833218|gb|BJ591230.1|BJ591230
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162156069|gb|FC332236.1|FC332236
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162264600|gb|FC441195.1|FC441195
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|67697413|gb|BJ957646.1|BJ957646
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162221767|gb|FC397099.1|FC397099
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|208398533|gb|DC912378.1|DC912378
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|67698256|gb|BJ958489.1|BJ958489
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|208353228|gb|DC926153.1|DC926153
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|37832766|gb|BJ590778.1|BJ590778
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162225968|gb|FC401285.1|FC401285
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162224323|gb|FC399543.1|FC399543
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162225969|gb|FC401286.1|FC401286
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162264599|gb|FC441194.1|FC441194
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|18374934|gb|BJ206512.1|BJ206512
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAG
EST: gi|18356285|gb|BJ188344.1|BJ188344
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGG
EST: gi|162263861|gb|FC439169.1|FC439169
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162263862|gb|FC439170.1|FC439170
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|208395889|gb|DC924271.1|DC924271
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGACATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162243968|gb|FC424299.1|FC424299
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|67699344|gb|BJ959577.1|BJ959577
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|208350810|gb|DC910441.1|DC910441
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGACATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162207730|gb|FC383815.1|FC383815
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|37848995|gb|BJ607003.1|BJ607003
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162233544|gb|FC410926.1|FC410926
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|208384935|gb|DC903442.1|DC903442
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162220494|gb|FC396031.1|FC396031
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|67574832|gb|BJ947656.1|BJ947656
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|208345441|gb|DC917338.1|DC917338
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162230762|gb|FC406393.1|FC406393
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162243969|gb|FC424300.1|FC424300
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162221768|gb|FC397100.1|FC397100
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGNGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|67574025|gb|BJ946849.1|BJ946849
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162207729|gb|FC383814.1|FC383814
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|67578642|gb|BJ950809.1|BJ950809
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
EST: gi|162156070|gb|FC332237.1|FC332237
EST:     CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAG                         GCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG
genomic: CGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 30 (downstream exon)
Score: 39

ACAGTATCCTCCCGGCTTGCAGCGCTACGAGACAATGACTGTGTTGCGTCCGGACATTACTGAGGACCAGCGTCTTGCGCTCACTCAGCGTTACGAAGAGgtaacgttgc ... ggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATGCAGCCGTTGGCCTACAATATCAAGACTAAGAACATGGCTGGATTTGCAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagcatgttgaatgaccatttaagttagctcaatatgttttttgtggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATGCAGCCGTTGGCCTACAATATCAAGACTAAGAACATGGCTGGATTTGCAA
                             tcaatatgtttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gctctcctgtggtcacaaactgatcgttaaccttagaattctttaaagcatgttgaatgaccatttaagttagctcaatatgttttttgtggatgtgtagGCCATCATCGCTGGAGGTGGATTGGACGTTGAGATGTTCAACAGGGGCATGCAGCCGTTGGCCTACAATATCAAGACTAAGAACATGGCTGGATTTGCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - tgttgaa