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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgttgtgtatttcgagtatgtgtgtctctcgacctggcatttcgcagctaaatgtcacggttcccaaattttctgtaatctcatgtcaagaagcgtggcagGGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATTGGAGGACCTTCACAATTTTGACGATGAACTGTCTGAAAGACTTCGGACTATGCCTGCT

Basic information

species Physcomitrella patens
transcript PP1S355_49V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18359076|gb|BJ191136.1|BJ191136
EST:     AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAG                         GGAGTCGCTGCTGCAAAA
genomic: AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAGgtttgtgttg ... agcgtggcagGGAGTCGCTGCTGCAAAA
EST: gi|18342645|gb|BJ174680.1|BJ174680
EST:     AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAG                         GGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATTGGAGGACCT
genomic: AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAGgtttgtgttg ... agcgtggcagGGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATTGGAGGACCT
EST: gi|18349563|gb|BJ181613.1|BJ181613
EST:     AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAG                         GGAGTCGCTGCTGCAA
genomic: AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAGgtttgtgttg ... agcgtggcagGGAGTCGCTGCTGCAA
EST: gi|18365348|gb|BJ197423.1|BJ197423
EST:     AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAG                         GGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATCGGAGGACCT
genomic: AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAGgtttgtgttg ... agcgtggcagGGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATTGGAGGACCT
EST: gi|18349306|gb|BJ181355.1|BJ181355
EST:     AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAG                         GGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATT
genomic: AAGGAGTTTATCCGTAGCTTTGGCGATGTGAAGGGACCATTTCCTTACAGgtttgtgttg ... agcgtggcagGGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaaatgtcacggttcccaaattttctgtaatctcatgtcaagaagcgtggcagGGAGTCGCTGCTGCAAAATCCGAATGTTCTGCAAGTTGCATTGGAGGACCTTCACAATTTTGACGATGAACTGTCTGAAAGACTTCGGACTATGCCTGCT
 agctaaa  putative branch site (score: 3)
                   aaattttctgtaat  TA-rich tract