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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgttcgaacctgcttaagttttgtaattgaaagctcttcattgctaggagtatatctgtagacatggtattgaataatgatactaatgtctcttgcagGAGGTTTCGGAGGAAACCATCAGCACGATCCGCACATCCTGTACACGCTGAGTGCTGTACAAATTCTGGCATTGTTTGACAGGCTTGATGCCGTGGATGC

Basic information

species Physcomitrella patens
transcript PP1S34_430V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100429526|gb|BY959607.1|BY959607
EST:     AAGGTCGATGAGATCGTGCCTTGAGATTCTCATGTGCCAGGATGAGTGCG                         GAGGTTTCGGAGGAAACCATCAGCACGATCCGCACATCCTGTACACGCTGA
genomic: AAGGTCGATGAGATCGTGCCTTG-GATTCTCATGTGCCAGGATGAGTGCGgtagtcatcc ... tctcttgcagGAGGTTTCGGAGGAAACCATCAGCACGATCCGCACATCCTGTACACGCTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaggagtatatctgtagacatggtattgaataatgatactaatgtctcttgcagGAGGTTTCGGAGGAAACCATCAGCACGATCCGCACATCCTGTACACGCTGAGTGCTGTACAAATTCTGGCATTGTTTGACAGGCTTGATGCCGTGGATGC
                                     tactaat  putative branch site (score: 1)
 tgtctctt  CT-rich tract
 tattgaataatgata  TA-rich tract