Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttatttttcttggattgtttttttaattatttatctttacgcgtctagggttctgggattttgacaagatactgagttacgatattcgatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGGTCCCGAGGTCAGGTGACCCAGGTGCGCGTTAAGTTCTTGGATGACCAGA

Basic information

species Physcomitrella patens
transcript PP1S34_107V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S34_107V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EDP05500 (Chlamydomonas reinhardtii), 3'ss of exon 2
--gttttatttttcttggattgtttttttaattatttatctttacgcgtctagggttctgggattttgacaagatactgag--ttacgatattcgat----ggtgcagGATACCGCCGTGAAGTTGGCTAT-----TGTGATGAAGGTGATCGGGCG----TACTGGGTCCCGAGGT---CAGGTGACCCAGGTGCGCGTTAAGTTCTTGGATGACCAGA------------------------------------------
  |  |         |||   |       ||   |         |   | || |     ||        |||   |||||   ||| |   | || |    || |  |  |   |||  | || |||| ||      |||   |   || | | |||    || ||| |     |||   |||||||||||||||||||| |||||| |||| |||||||                                          
gtgcgtcggcgccggtggcgcgcaagcgaaagcgtggccggcagcttctataagcaataggagggaatgcaaagaactgaaatttatggcctgcggtgcacggggtcgagtggtgcc-cggagctggcaatgcgcccgtgggaatcttgcttgagcgctggtattggctgtttgggtgcgcagGTGACCCAGGTGCGCGTCAAGTTCCTGGACGACCAGAACCGCCTGATCATGCGCAACGTGAAGGGCCCCGTCCGCGAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162237726|gb|FC413341.1|FC413341
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162247728|gb|FC423386.1|FC423386
EST:     GTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|18354218|gb|BJ186274.1|BJ186274
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162201587|gb|FC377443.1|FC377443
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTTGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162201662|gb|FC377466.1|FC377466
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|18336172|gb|BJ168194.1|BJ168194
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|67702749|gb|BJ962982.1|BJ962982
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162211247|gb|FC386959.1|FC386959
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTGGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162218568|gb|FC395145.1|FC395145
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162211248|gb|FC386960.1|FC386960
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162218567|gb|FC395144.1|FC395144
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTTGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162211841|gb|FC387713.1|FC387713
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|19786586|gb|BQ040506.1|BQ040506
EST:     GCCTCGGCCCCTTTGTTTGACAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162229639|gb|FC405102.1|FC405102
EST:     CGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: CGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162239564|gb|FC416846.1|FC416846
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|67720259|gb|BJ970518.1|BJ970518
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162214155|gb|FC390201.1|FC390201
EST:     GTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162240199|gb|FC418326.1|FC418326
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTTGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|7067210|gb|AW497065.1|AW497065
EST:     CGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: CGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|18327941|gb|BJ159945.1|BJ159945
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|67576488|gb|BJ949312.1|BJ949312
EST:     CCTCGGCCCCTTTGGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: CCTCGGCCCCTTT-GTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|37835690|gb|BJ593702.1|BJ593702
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|37832914|gb|BJ590926.1|BJ590926
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162201588|gb|FC377444.1|FC377444
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|67695626|gb|BJ955859.1|BJ955859
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162249572|gb|FC426478.1|FC426478
EST:     CTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: CTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162246074|gb|FC421911.1|FC421911
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|67721255|gb|BJ971514.1|BJ971514
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|67692460|gb|BJ952693.1|BJ952693
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162221848|gb|FC398415.1|FC398415
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162230334|gb|FC406898.1|FC406898
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|18355970|gb|BJ188029.1|BJ188029
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162226719|gb|FC402764.1|FC402764
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|67700171|gb|BJ960404.1|BJ960404
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162234671|gb|FC410417.1|FC410417
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162240200|gb|FC418327.1|FC418327
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162209896|gb|FC386038.1|FC386038
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|67576637|gb|BJ949461.1|BJ949461
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162211861|gb|FC387733.1|FC387733
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|162225153|gb|FC402193.1|FC402193
EST:     CGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: CGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
EST: gi|67572259|gb|BJ945083.1|BJ945083
EST:     GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATG                         GATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG
genomic: GCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 23

CTGTTGTGGCCAGATCTCTTTCGCCATCTTTCGTGAGTCTGCGGCTTCGCGCCTCGGCCCCTTTGTTTGTCAACTCGCTCTCTCGCTCGACTACATTATGgtacactcca ... gatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGGTCCCGAGGTCAGGTGACCCAGGTGCGCGTTAAGTTCTTGGATGACCAGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctagggttctgggattttgacaagatactgagttacgatattcgatggtgcagGATACCGCCGTGAAGTTGGCTATTGTGATGAAGGTGATCGGGCGTACTGGGTCCCGAGGTCAGGTGACCCAGGTGCGCGTTAAGTTCTTGGATGACCAGA
                ttttgac  putative branch site (score: 23)
               attttga  TA-rich tract