1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttaatagtcagggattgcggatcaatccaatgtcgaacagataacaccgtatccttttcgtctcacaattttctcttgacattgaaaattgctgattcagTTTGCCAGGGAGAATCCGTTGCCTGAGCTCCCAACTCAAGTGAAGATTGAAAACCTCTCTGACCTTGATGAAGAGGCCGTCACCACCACTCTTCGTCGAT
species | Physcomitrella patens |
transcript | PP1S33_211V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAATCGCTTCGAGCAGGCTCACAGTAGCGATCTGATCATGCGCTTGCAG TTTGCCAGGGAGAATCCGTTGCCTGAGCTCCCAACTCAAGTGAAGATTGAAEST: gi|67703827|gb|BJ964060.1|BJ964060
genomic: AGAATCGCTTCGAGCAGGCTCACAGTAGCGATCTGATCATGCGCTTGCAGgttggttgat ... gctgattcagTTTGCCAGGGAGAATCCGTTGCCTGAGCTCCCAACTCAAGTGAAGATTGAA
EST: AGAATCGCTTCGAGCAGGCTCACAGTAGCGATCTGATCATGCGCTTGCAG TTTGCCAGGGAGAATCCGTTGCCTGAGCTCCCAACTCAAGTGAAGATTGAAEST: gi|100361183|gb|BY946955.1|BY946955
genomic: AGAATCGCTTCGAGCAGGCTCACAGTAGCGATCTGATCATGCGCTTGCAGgttggttgat ... gctgattcagTTTGCCAGGGAGAATCCGTTGCCTGAGCTCCCAACTCAAGTGAAGATTGAA
EST: AGAATCGCTTCGAGCAGGCTCACAGTAGCGATCTGATCATGCGCTTGCAG TTTGCCAGGGAGAATCCGTTGCCTGAGCTCCCAACTCAAGTGAAGATTGAAEST: gi|100441769|gb|BY962860.1|BY962860
genomic: AGAATCGCTTCGAGCAGGCTCACAGTAGCGATCTGATCATGCGCTTGCAGgttggttgat ... gctgattcagTTTGCCAGGGAGAATCCGTTGCCTGAGCTCCCAACTCAAGTGAAGATTGAA
EST: AGAATCGCTTCGAGCAGGCTCACAGTAGCGATCTGATCATGCGCTTGCAG TTTGCCAGGGAGAATCCGTTGCCTGAGCTCCCAACTCAAGTGAAGATTGAA
genomic: AGAATCGCTTCGAGCAGGCTCACAGTAGCGATCTGATCATGCGCTTGCAGgttggttgat ... gctgattcagTTTGCCAGGGAGAATCCGTTGCCTGAGCTCCCAACTCAAGTGAAGATTGAA
accgtatccttttcgtctcacaattttctcttgacattgaaaattgctgattcagTTTGCCAGGGAGAATCCGTTGCCTGAGCTCCCAACTCAAGTGAAGATTGAAAACCTCTCTGACCTTGATGAAGAGGCCGTCACCACCACTCTTCGTCGAT
tgctgat putative branch site (score: 3)
attgaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatagtcagggattgcggatcaatccaatgtcgaacagataacaccgtatccttttcgtctcacaattttctcttgacattgaaaattgctgattcagTTTGCCAGGGAGAATCCGTTGCCTGAGCTCCCAACTCAAGTGAAGATTGAAAACCTCTCTGACCTTGATGAAGAGGCCGTCACCACCACTCTTCGTCGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG