1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cggacacgcttgtccagaattttcttgtgatgcattgatggtgcggatactaaactatttactcatcagatatcttcctgtgtattcgtttctgcagcagAAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGGAGCTCAAGTTCGCTCTAGAGTCGATGTGGGATGGCAAGACCCAGGCTGC
species | Physcomitrella patens |
transcript | PP1S33_110V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|67702889|gb|BJ963122.1|BJ963122
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|67702197|gb|BJ962430.1|BJ962430
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|18368888|gb|BJ200973.1|BJ200973
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|100362680|gb|BY947474.1|BY947474
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|100385352|gb|BY950944.1|BY950944
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|67709987|gb|BJ965803.1|BJ965803
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAG AAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGGEST: gi|18327480|gb|BJ159483.1|BJ159483
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGgtacgtagcg ... tctgcagcagAAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGG
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|67712939|gb|BJ966388.1|BJ966388
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|18330968|gb|BJ162974.1|BJ162974
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAG AAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGGEST: gi|100377958|gb|BY949608.1|BY949608
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGgtacgtagcg ... tctgcagcagAAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGG
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|18361838|gb|BJ193905.1|BJ193905
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|18364414|gb|BJ196487.1|BJ196487
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|100384569|gb|BY987428.1|BY987428
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|18350806|gb|BJ182857.1|BJ182857
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|67718712|gb|BJ968971.1|BJ968971
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|18362361|gb|BJ194431.1|BJ194431
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|67702366|gb|BJ962599.1|BJ962599
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAG AAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGGEST: gi|100401427|gb|BY990997.1|BY990997
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGgtacgtagcg ... tctgcagcagAAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGG
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|18374880|gb|BJ206458.1|BJ206458
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|18373260|gb|BJ204862.1|BJ204862
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|67719247|gb|BJ969506.1|BJ969506
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|100386286|gb|BY987953.1|BY987953
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|18328770|gb|BJ160775.1|BJ160775
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|18332288|gb|BJ164301.1|BJ164301
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGCAGEST: gi|100433344|gb|BY960558.1|BY960558
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTT---CAGgtacgtagcg ... tctgcagc
EST: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAG AAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGG
genomic: TCGAGCTTCAGGCCTGTTTACTCAGGACAGGGCGTCTCTTCAGTCTTCAGgtacgtagcg ... tctgcagcagAAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGG
gatactaaactatttactcatcagatatcttcctgtgtattcgtttctgcagcagAAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGGAGCTCAAGTTCGCTCTAGAGTCGATGTGGGATGGCAAGACCCAGGCTGC
tactaaa putative branch site (score: 1)
ttcgtttct putative PPT
taaactattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggacacgcttgtccagaattttcttgtgatgcattgatggtgcggatactaaactatttactcatcagatatcttcctgtgtattcgtttctgcagcagAAACGATGGCTTCCCACGTGGTTGGATACCCCCGTATGGGCCCCAAGAGGGAGCTCAAGTTCGCTCTAGAGTCGATGTGGGATGGCAAGACCCAGGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - -tgatgca