1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atttcacgtgcatggctacgtagtttcttgacctaatggctcaaagcaccgaaacatccattacataagagctaaacctgaatcttatcttcgtgtgcagGATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCGACAATGGATCAGGAATGGTCAAG
species | Physcomitrella patens |
transcript | PP1S337_26V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGCCTTGCGCATCACCAGCTTTGGAAATCATCCCGTCTCGCATCCACAG GATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCGEST: gi|100404907|gb|BY991341.1|BY991341
genomic: CGGCCTTGCGCATCACCAGCTTTGGAAATCATCCCGTCTCGCATCCACAGgtttgcctca ... tcgtgtgcagGATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCG
EST: CGGCCTTGCGCATCACCAGCTTTGGAAATCATCCCGTCTCGCATCCACAG GATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCGEST: gi|18358815|gb|BJ190874.1|BJ190874
genomic: CGGCCTTGCGCATCACCAGCTTTGGAAATCATCCCGTCTCGCATCCACAGgtttgcctca ... tcgtgtgcagGATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCG
EST: CGGCCTTGCGCATCACCAGCTTTGGAAATCATCCCGTCTCGCATCCACAG GATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCGEST: gi|18359491|gb|BJ191552.1|BJ191552
genomic: CGGCCTTGCGCATCACCAGCTTTGGAAATCATCCCGTCTCGCATCCACAGgtttgcctca ... tcgtgtgcagGATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCG
EST: CGGCCTTGCGCATCACCAGCTTTGGAAATCATCCCGTCTCGCATCCACAG GATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCGEST: gi|18375263|gb|BJ206841.1|BJ206841
genomic: CGGCCTTGCGCATCACCAGCTTTGGAAATCATCCCGTCTCGCATCCACAGgtttgcctca ... tcgtgtgcagGATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCG
EST: CGGCCTTGCGCATCACCAGCTTTGGAAATCATCCCGTCTCGCATCCACAG GATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCG
genomic: CGGCCTTGCGCATCACCAGCTTTGGAAATCATCCCGTCTCGCATCCACAGgtttgcctca ... tcgtgtgcagGATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCG
gcaccgaaacatccattacataagagctaaacctgaatcttatcttcgtgtgcagGATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCGACAATGGATCAGGAATGGTCAAG
agctaaa putative branch site (score: 18)
tcttatcttc putative PPT
attacataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcacgtgcatggctacgtagtttcttgacctaatggctcaaagcaccgaaacatccattacataagagctaaacctgaatcttatcttcgtgtgcagGATAATATTAAGGCATGGCTGACGGTGAGGATGTTCAACCTTTGGTGTGCGACAATGGATCAGGAATGGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - cacgtgc