1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtgggttactggtttatccaaggagccttgtgcgtcctattttggaacgtgaatttatttatttcatcacttgcaccccgatgacttttgacttttgcagAGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAG
species | Physcomitrella patens |
transcript | PP1S332_23V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAACGCTCCGCTGTTTGCCCGCGTGGAGATTGTTAGAGGAAACGGGAAG AGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGTEST: gi|162219572|gb|FC395568.1|FC395568
genomic: GCAACGCTCCGCTGTTTGCCCGCGTGGAGATTGTTAGAGGAAACGGGAAGgtatgctctt ... acttttgcagAGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGT
EST: GCAACGCTCCGCTGTTTGCCCGCGTGGAGATTGTTAGAGGAAACGGGAAG AGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGTEST: gi|18350788|gb|BJ182839.1|BJ182839
genomic: GCAACGCTCCGCTGTTTGCCCGCGTGGAGATTGTTAGAGGAAACGGGAAGgtatgctctt ... acttttgcagAGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGT
EST: GCAACGCTCCGCTGTTTGCCCGCGTGGAGATTGTTAGAGGAAACGGGAAG AGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGTEST: gi|18359944|gb|BJ192005.1|BJ192005
genomic: GCAACGCTCCGCTGTTTGCCCGCGTGGAGATTGTTAGAGGAAACGGGAAGgtatgctctt ... acttttgcagAGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGT
EST: GCAACGCTCCGCTGTTTGCCCGCGTGGAGATTGTTAGAGGAAACGGGAAG AGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGT
genomic: GCAACGCTCCGCTGTTTGCCCGCGTGGAGATTGTTAGAGGAAACGGGAAGgtatgctctt ... acttttgcagAGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGT
aacgtgaatttatttatttcatcacttgcaccccgatgacttttgacttttgcagAGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAG
ttttgac putative branch site (score: 48)
cttttgc CT-rich tract
aatttatttatttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttactggtttatccaaggagccttgtgcgtcctattttggaacgtgaatttatttatttcatcacttgcaccccgatgacttttgacttttgcagAGAAACATGGTAGTACAAGCGCAAGCAGGGTTCCTGAAGCTTCTTGATGGTCATGCTCTGAATTTAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacttgc