1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagcgctcttgcctccaacttccttcattttttggggtttttttttgacttcttactggttttaaggtctggaaccactttggagagctttcgtccaattgcgatgctcacgttgtttgaggtggtggtgcttggtgcgtggcagTAACAATATTCTGTATCCGAGAGAGGATCGGGATAAGAAGGTTTTGCTCTACGCCTGCCGAAATTGTGACCACCAG
species | Physcomitrella patens |
transcript | PP1S328_43V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTCGATACTAATCCGTCACCATGAGTACCATGAAGTTTTGTCGAGAGTG TAACAATATTCTGTATCCGAGAGAGGATCGGGATAAGAAGGTTTTGCTCTAEST: gi|18349548|gb|BJ181598.1|BJ181598
genomic: GTTCGATACTAATCCGTCACCATGAGTACCATGAAGTTTTGTCGAGAGTGgtgagcgctc ... tgcgtggcagTAACAATATTCTGTATCCGAGAGAGGATCGGGATAAGAAGGTTTTGCTCTA
EST: GTTCGATACTAATCCGTCACCATGAGTACCATGAAGTTTTGTCGAGAGTG TAACAATATTCTGTATCCGAGAGAGGATCGGGATAAGAAGGTTTTGCTCTAEST: gi|100442228|gb|BY981252.1|BY981252
genomic: GTTCGATACTAATCCGTCACCATGAGTACCATGAAGTTTTGTCGAGAGTGgtgagcgctc ... tgcgtggcagTAACAATATTCTGTATCCGAGAGAGGATCGGGATAAGAAGGTTTTGCTCTA
EST: GTTCGATACTAATCCGTCACCATGAGTACCATGAAGTTTTGTCGAGAGTG TAACAATATTCTGTATCCGAGAGAGGATCGGGATAAGAAGGTTTTGCTCTA
genomic: GTTCGATACTAATCCGTCACCATGAGTACCATGAAGTTTTGTCGAGAGTGgtgagcgctc ... tgcgtggcagTAACAATATTCTGTATCCGAGAGAGGATCGGGATAAGAAGGTTTTGCTCTA
tcgtccaattgcgatgctcacgttgtttgaggtggtggtgcttggtgcgtggcagTAACAATATTCTGTATCCGAGAGAGGATCGGGATAAGAAGGTTTTGCTCTACGCCTGCCGAAATTGTGACCACCAG
tgctcac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcgctcttgcctccaacttccttcattttttggggtttttttttgacttcttactggttttaaggtctggaaccactttggagagctttcgtccaattgcgatgctcacgttgtttgaggtggtggtgcttggtgcgtggcagTAACAATATTCTGTATCCGAGAGAGGATCGGGATAAGAAGGTTTTGCTCTACGCCTGCCGAAATTGTGACCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG