Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA

Basic information

species Physcomitrella patens
transcript PP1S327_64V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os03g42630.1 (Oryza sativa), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactga--gatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                          |||||     || | |   ||        |        |     |||| |||   || |  |  |    ||||   | | |     |  |||  |||| | ||||  || || |   | ||||||||||||||||||||||||||| |||| || |||||||| |||||||| || || || ||  | ||||| ||    || ||
-------------------------atatcactgcatgca-tacactacaaatgcacacgtacaaatgaatgaattgatcaatcgttcttacacatgaacgcaatgtt----gatggatgtgatat-gcagGCAAGGCAAGCATGGGGGAGAAGGAGTGGTACTTCTTCAGCATGCGCGACCGCAAGTACCCGACGGGGATCCGCACCAACCGCGCCACGGACTCCGGCTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os08g10080.1 (Oryza sativa), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
        | ||||   || | ||| |   ||||    | || || ||        | ||  ||||||| |   ||    |   || |    | ||  ||    | ||| |  |  | ||   |||||||    |||    | || |  ||||||||||||||||||||||| || || ||||||||  | || ||    || || ||  | ||||||      || ||
--------atctcc---tcttcccaattcgatct----tcgtctgatg--------agttcatgatcatcttctcttgtcttttccaa----tcgatctttcaattctctgccgccattg--tttgcagACGCGGCGTGCGTGGGAGGCAAGGAGTGGTACTTCTTCAGCCTCCGCGACCGCAAGTACGCCACCGGCCACCGCACCAACCGCGCCACCCGCTCCGGCTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os04g38720.1 (Oryza sativa), 3'ss of exon 2
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcct---ccga-atttggtgatcatgtgaactg--agatggaccgaatcattgaaattagtttcctcggtgg-gaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
|| |  ||| ||| |      |  | || |          |  ||| ||  |   | ||   ||| |    |  || |      ||| | |    |   | | ||  |||    | | |  | ||| || | ||||     |||||| | |||||||||||||||||||||||| ||||   |||  | ||||| ||||||||  || | || || || || || ||    || ||
gtaa-gcaacctctcctctacttaattacctctgcaatctgcatgcagtgatgaactgatgattgatatatacatggatcattggattggctagctagctaacatctgttgatgctgcgatggaattat-tggcagCTCTGGCGAAGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCTCAAGGACAGGAAGTACCCGACGGGGCTGAGGACGAACAGGGCGACGGAGTCCGGGTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os01g29840.1 (Oryza sativa), 3'ss of exon 2
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTA---GGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                         |||  |  |  | |||| |    |  |  |||||     |   | |  |   | ||     |    ||| | ||   |    | | || ||||  |   || || ||| |||||| |    ||||||||||||||||| |||| | ||| |  |||||| |||||||||||||| ||| | || || || || || ||   |||   
-------------------------gtaa-acatcatatagtat----tagtttgaattgaaaaaaattatatatatatataattagggaaatttatatatatgatat-gatgtgaaaaaaaaatgtagGGAAGGCGAAGATGAACGGGGAGAAGGAGTGGTATTTCTACTGCCAGAAGGATCGGAAGTATCCGACGGGGATGAGGACGAACAGGGCGACGGAGGCGGG---

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os12g41680.1 (Oryza sativa), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
        ||      ||   |  | ||| ||||  |  | |      |  |     |||||| || |  ||   ||   |      |||  |    ||  ||||  |   ||  ||           |||   |||  | | || |  |||||||||||||||||||||||| |||| || || ||  |||||||   ||| || ||  ||||||| |    ||| ||
--------aatgtgtgataactttattattatct--ttcaattaaagataatt--gttttggttattaattg--ttggtgtatttataatttt----atatgttttttttatgataa-----------gAGGTGGCGTCGGTGGGCGGAAAGGAGTGGTACTTCTTCAGCCTGAGGGACCGAAAATACGCGACGGGGCAGCGTACGAACCGAGCCACGGTTTCGGGGTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os03g21030.1 (Oryza sativa), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                 |  |||| | ||  |||  | |  |    | ||| |   ||| | |  |    | ||      ||| |  |         || ||||| |  |||  ||  |    | ||||  |  |||||| | |||||||||||||||||||||||| |||    ||| |||||||| ||||| || | | | || ||  | || || || |  || ||
---------------gtttgttcctgaattctctcctttttt---ttctccccttgattcgttcgtacgataaatctt--tgggcttac------ggatgagtttgcgtggtttgattt---ttggcagCCATGGCGAAGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCACAAGGACCGCAAGTACCCGACCGGGACGAGGACGAACCGGGCGACGGAGAGCGGCTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os02g36880.1 (Oryza sativa), 3'ss of exon 2
gtgacacaaactc--ccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcat--gtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatct-----------------tgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
|| |  ||| ||   | |     ||  |     |||   ||      | |||   || |  |  |||||    ||||   |   | |     ||  || |  | | ||     ||||   |  ||| |                 ||||| ||  |||| | | |||||||||||||||||||||||| || ||  ||| || ||||| ||||||||  || | || || || || || ||    || ||
gtaagccaagcttagctagctactctcgatctctctcaagtctcaaacagtcgcgcgtacgta-tgatcgctagtgagtagtactaggtttgatttttcatgtgatttatgggggtgatcagagatgtgtgtgtacgtgtgcgcatgcagCGAGGGCGACGATGGGGGAGAAGGAGTGGTACTTCTTCTGCGTGAAGGACCGGAAGTACCCGACGGGGCTGAGGACGAACAGGGCGACGGAGTCCGGGTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G386163_T02 (Zea mays), 3'ss of exon 1
gtgacacaaactcccaatccttccagtat-catctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                         ||||  | | |||  |  ||    |      ||  | | | |||| |   |  | ||      ||  ||  || || | ||  |  || | || || |    |||||||||||||| | || || || |||||||| |||||||||||| |||| |||||||| || |||||  ||||||||||  | |||||  |    |||||
----------------------aatgtatataaccggttaaaagttagctttgaaaaaagttgcgttcatttatgcacacata-----aaaaatgaaacttggatttatttgttg-aattgttgc--cagAGAAAGCGAAGCTGGGAGAAAAAGAGTGGTATTTCTTCAGCCTGAGGGACCGCAAGTACCCAACGGGTGTGCGAACAAACCGTGCCACTAACGCTGGTTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G393433_T02 (Zea mays), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcct-cggtgggaaatgatcttg-cagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                                   ||| |||| ||||  ||  |  |     || ||     || ||  || |  ||  |||| |  ||    |  |  | || ||  ||||||   |||| || |||||| | |||||||||||||||||||||| |||||| || || |||||||| ||||||||  |||| || ||  | ||||| |     || ||
-----------------------------------gtg-agtgagctg--ctttgcttgcatcgaccaccc--accgat-tgaataga--cattaagcttgtcgtgatgtgatgtgatctgatctgatcagACAAGGCGAAGATGGGGGAGAAGGAGTGGTACTTCTACAGCCTCCGCGACCGCAAGTACCCGACGGGCCTGCGCACCAACCGCGCCACGGTGGCCGGCTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G167018_T01 (Zea mays), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagt-ttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                        ||  | |  || |  |     ||   |  ||||     |     |||  | |||  |  || ||| |  | | |||| | ||  ||| | |   ||| ||   ||||    |||    | || | ||||||||||||||||||||||||||| || ||||||||  |||||||   ||| || ||  | |||||  |    || ||
----------------------ttagactgacgtgat--aaccaactacaccacgaaaccatt-----tgttgattgaactatacagaaactgttatattattatttttcgttcgttgatg-tcgatcagATTCCGCGTGCGTGGGTGGGAAGGAGTGGTACTTCTTCAGCCTGCGCGACCGCAAGTACGCGACGGGGCAGCGCACTAACCGCGCCACGCACTCCGGCTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G139700_T01 (Zea mays), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                            | |    ||| |||| | |        |  |   |  ||  |        ||  |  |  ||||    | |  | |      |  |   |||||   ||||| || |||||| | |||||||||||||||||||||| | |||| || || |||||||| ||||||||  |||| || ||  | ||||| |     || ||
---------------------------gtgagtgagtg-agtgggttacatat--acgtacatactctcgctggtgatgaccgtaccgatcacccgactatgatgatgatgatgatgatgatga-gcagACAAGGCGAAGATGGGGGAGAAGGAGTGGTACTTCTACTGCCTCCGCGACCGCAAGTACCCGACGGGCCTGCGCACCAACCGCGCCACGGCGGCCGGCTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G009892_T01 (Zea mays), 3'ss of exon 2
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                                 |      |   || | |  |  |  |    ||||||||      | | |||  | |  ||   |  |  |||  | |                ||| |   |||| | | |||||||||||||||||||||||| ||||   ||| |||||||| ||||||||  || | || ||  | ||||| ||    || ||
--------------------------------gtaagcacgcacgc-gccggcatagctactagatcatgt---tctaaaaggaagggagtatgatatgtgatttggttg-------------cgccagCGCTGGCGAGGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCTCAAGGACCGCAAGTACCCGACGGGGCTGAGGACCAACCGGGCCACGGAGGCCGGGTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G031001_T01 (Zea mays), 3'ss of exon 1
--------------------------------------------gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaat-ttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgg-gaaatgatct-tgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                                            |  | | | ||   ||   |||      |  | ||   | |||   ||| ||   | |  |  |  |  | |   ||| ||   |  |   |  | || |||  |     | | | |   |||| | | |||  |  || ||| | |||||||||||||||||||||||| |||    |||||||||||| |||||||| | ||| || ||  | ||||| || |  || ||
gttagcactgcgcgctactgcttgatacgtcctcacctcaaagagccaaatagacctgcacctctttt----ttttttgactttgtgc-ttgtactagtagtacttctctttctctcggctgggaatcatggcggc-ctaaatttaactgggaagcttgcgttttgatttctccagGCAGGGCCAAGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCACAAGGATCGCAAGTACCCGACGGGCACGCGGACCAACCGCGCCACGGAGACCGGCTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G159500_T01 (Zea mays), 3'ss of exon 1
----------------gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatg--gaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                    ||   || ||  ||   || |           | |       ||| || | | |      |      |    || |    | || || ||   |||  |     ||  | |    ||  |  | |||  |  || ||| | |||||||||||||||||||||||| |||    |||||||||||| |||||||| | ||| || ||  | ||||| || |  || ||
gttagtacttgctgctactgcatcgacgcctcatagctctaaacctgcaccttttttccccttgtgcttctactagtagtacttctcggctggaaaccatgccctaaccaaaaaaaggacggaactttgcgttggat--ttctccagGCAGGGCCAAGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCACAAGGATCGCAAGTACCCGACGGGCACGCGGACCAACCGCGCCACGGAGACCGGCTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA19G28520.1 (Glycine max), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
              |||   |   |   |||| ||   |||    |  || ||      | ||||| || |  |    | | ||  |||  |||||  |  |||   |   || |      |  |||||||||||| ||| |||||||||| ||||||||||||||| |||    |||| | ||||| || || || ||| | || |||||||| || |||   || ||
------------gtcaactgtaataaattcat-tgtaatagcaaacattcttc------ttgtgattattttga---ggttcgaatgaaatattgac-taggttgggttaatgtg------ttgtgcagAGAAAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGCCAAAAGGATAGGAAGTACCCAACTGGGATGAGGACCAATAGAGCAACAGAATCTGGGTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA16G04720.1 (Glycine max), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatg-gaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                   || | | ||  ||    | |||  |||||   |   |||||| ||||  | |    |||| |  ||  |||  |||||  || |||   |   || |   ||    |||||||||||| ||| |||||||||| ||||||||||||||| | |    |||| | ||||| || || || ||| |||| |||||||| || |||   || ||
------------------tctcctaata--attaactttagc-tgctggtttgt-aatttgatgattgttt---ttgaggtttgaatgaaatattgac-ttggttgagttaatgtgtgttg----tgcagAGAAAGCCAAGATAGGGGAGAAAGAGTGGTACTTCTTCTGTCAAAAGGATAGGAAGTACCCAACTGGGATGAGAACCAATAGAGCAACAGAATCTGGGTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT3G15170.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgt-agtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                  | ||  |  | |   |    | ||||  | |||||     || |||     | | ||      |   ||  |   |     | | ||||     |   |  |||    ||||||||||||||  | |||||||||||||||||||||||||  ||  | || || || || || |||||| || |||| || ||||| || |||   |||||
------------------ctttatatcaacccttcacatgagtgaccagtcctt---gttcggt-----tctaaaacagagtcctccttactctgtttgtaactttcacttataccatttga----gcagAGAAAGCGAAAATGGGGGAGAAGGAGTGGTACTTCTTCACACTAAGAGACCGTAAATACCCAACGGGACTGAGAACGAACAGAGCAACAGAAGCTGGTTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv19s0014g02200.t01 (Vitis vinifera), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgc-tgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                                 ||||      | | |  ||| | |  ||     |||     ||  | |    ||      ||  |   | |||  |        ||        |||| ||||| ||| | || |||||||||||||||||||||||||| || ||||| |||||||| || ||  | ||||| ||  | ||||| |||   || ||
-------------------------------gttggtaccacctacctacccttctacattttctctcaaac--acccacacaatccattaatttatagccattttttttaacatacaa-------acagAAAAAGCAAAGATGGGAGAGAAGGAGTGGTACTTCTTCAGCCTCCGCGATCGGAAGTATCCAACTGGCCTCCGAACCAACCGGGCCACAGAAGCTGGCTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ22540 (Selaginella moellendorffii), 3'ss of exon 1
----------------------------------------------gtgacacaaactcccaatccttccagtatc--atctggtgtagtgtgct----gtcctcc---gaatttgg---tgatcatgtgaactgagatg---gaccgaa--tcattgaaattagtttcctcggtgggaaatgatctt---gcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                                                  | ||  ||| | |   |    |  |   || || || | ||   |    |   |||   ||| ||||    |||||  ||    ||| ||   |  ||||  || |  |||    | ||||  ||      |  | |    ||||||||||| ||  | || |||||||| ||||||||||| ||| || |||| || ||||| |||||||| ||||| || ||| | || |||||    || ||
gtaaggaggaactctcccatcttctctcgcattcgtttctatgatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGGAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ11746 (Selaginella moellendorffii), 3'ss of exon 1
----------------------------------------------gtgacacaaactcccaatccttccagtatc--atctggtgtagtgtgct----gtcctcc---gaatttgg---tgatcatgtgaactgagatg---gaccgaa--tcattgaaattagtttcctcggtgggaaatgatctt---gcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                                                  | ||  ||| | |   |    |  |   || || || | ||   |    |   |||   ||| ||||    |||||  ||    ||| ||   |  ||||  || |  |||    | ||||  ||      |  | |    ||||||||||| ||  | || |||||||| ||||||||||| ||| || |||| || ||||| |||||||| ||||| || ||| | || |||||    || ||
gtaaggaggaactctctcatcttctctcgcattcgcttctatcatttcctctcactctctcgacgttcttgggcttgaatttgctgcattgcattcatggcattccaaggaacttggaatcgatcacttgggtcgagttgcctggacgaaattcctctaaaaatctctcctttgttcttttttctttcccggcagAGAAAGCAAACATGGGAGAGAAGGAATGGTACTTCTTTAGCTTGAGGGACCGTAAGTACCCGACGGGGATGCGTACGAATCGGGCAACCGAGGCCGGCTA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ32111 (Selaginella moellendorffii), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatct-tgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                            |  | ||   | || |    |  ||     | | ||   || |       |  |  |   | || |   |  | |||| |   |||    || ||    |||| || || ||| | || |||||||| |||||||||||||  |||||||| || |||||||| ||||||||||| |||||  ||||||||||    || ||
----------------------------ttctatg-catcgtttctcataatcttggctagatg-ctatctatttcttggagtccgtgagcactactaacactttcgtttttggctcttgctccacacagACAAGGCCAAGATGGGTGAGAAGGAATGGTACTTCTTCACGCTGCGGGACCGAAAGTATCCTACGGGAATGCGCACAAACCGAGCCACCGAGGCCGGATA

upper sequence: PP1S327_64V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ37734 (Selaginella moellendorffii), 3'ss of exon 1
gtgacacaaactcccaatccttccagtatcatctggtgtagtgtgctgtcctccgaatttggtgatcatgtgaactgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatct-tgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
                            |  | ||   | || |    |  ||     | | ||   || |       |  |  |   | || |   |  | |||| |   |||    || ||    |||| || || ||| | || |||||||| |||||||||||||  ||||| || || |||||||| ||||||||||| |||||  ||||||||||    || ||
----------------------------ttctatg-catcgtttctcataatcttggctagatg-ctatctatttcttggagtccgtgagcactactaacactttcgtttttggctcttgctccacacagACAAGGCCAAGATGGGAGAGAAGGAATGGTACTTCTTCACGCTGCGAGACCGAAAGTATCCTACGGGAATGCGCACAAACCGAGCCACCGAGGCCGGATA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 7

GTAGTCTATTACCTGGCCAGAAAGATCAGAGAGCCTGGCTTCGAAGTTAAGACCATTTGCGAAGTGGACCTAAACAAATGCGAGCCGTGGGACCTTCCAGgtgacacaaa ... gatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagatggaccgaatcattgaaattagtttcctcggtgggaaatgatcttgcagAGAAAGCGAAGTTAGGGGAGAAGGAGTGGTACTTCTTCAGCCTGCGGGATCGCAAGTATCCGACGGGAATGCGAACAAATAGAGCCACCGAAAAGGGTTA
             aatcattgaaatta  TA-rich tract