1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agttagtcacgctgccctgttcggttttaattccgttgcactgtgatttgcgtggtccgggactgtgttcttactacttgcatcttccccttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
species | Physcomitrella patens |
transcript | PP1S323_70V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATGEST: gi|162194279|gb|FC368501.1|FC368501
genomic: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
EST: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATGEST: gi|100388426|gb|BY952028.1|BY952028
genomic: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
EST: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGGACCCCTGAGAGGCEST: gi|67507624|gb|BJ940505.1|BJ940505
genomic: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATG-ACCCCTGAGAGGC
EST: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATGEST: gi|162183206|gb|FC360356.1|FC360356
genomic: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
EST: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATGEST: gi|162196412|gb|FC373558.1|FC373558
genomic: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
EST: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATGEST: gi|162213600|gb|FC389680.1|FC389680
genomic: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
EST: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATGEST: gi|162263003|gb|FC438811.1|FC438811
genomic: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
EST: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATGEST: gi|162167423|gb|FC343126.1|FC343126
genomic: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
EST: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATGEST: gi|162221129|gb|FC397770.1|FC397770
genomic: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
EST: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATGEST: gi|162178499|gb|FC354951.1|FC354951
genomic: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
EST: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATGEST: gi|162279509|gb|FC455820.1|FC455820
genomic: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
EST: CTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATGEST: gi|162162258|gb|FC338040.1|FC338040
genomic: CTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
EST: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCG GAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
genomic: CACTCGCTGCGGCGAAGTCTGTGCTGAATACGCCAAAACGTTCTATCTCGgtaagttcct ... ttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
atttgcgtggtccgggactgtgttcttactacttgcatcttccccttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
ttcttac putative branch site (score: 18)
cttgcatcttcccctt putative PPT
ttatcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttagtcacgctgccctgttcggttttaattccgttgcactgtgatttgcgtggtccgggactgtgttcttactacttgcatcttccccttatctacagGAACCAAGCTAATGACCCCTGAGAGGCAACGCGCTATCTGGGCGATATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG