1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...attccgtgtgacagatacggagagatgaaacgaccagtgttgattcgttcctgagaagctttgtgctgatgattggtttatttgtggtggaattcggtagGGGCATGTGGAATGCCGTGCGCAAGGAGGTGAAGGCGTGGTTCAGAATTTCGATGACAGTAGGCGACAGAATGAATCTTGGAGAGCTTATGCCTTTGGTG
species | Physcomitrella patens |
transcript | PP1S323_60V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGAGGCGATGGGTGGAAATGTCGGGGAGAACGTCGTGGTCGCGGCCACGG GGGCATGTGGAATGCCGTGCGCAAGGAGGTGAAGGCGTGGTTCAGAATTTCEST: gi|162276979|gb|FC453077.1|FC453077
genomic: GGAGGCGATGGGTGGAAATGTCGGGGAGAACGTCGTGGTCGCGGCCACGGgtaatggttt ... aattcggtagGGGCATGTGGAATGCCGTGCGCAAGGAGGTGAAGGCGTGGTTCAGAATTTC
EST: GATGGGTGGAAATGTCGGGGAGAACGTCGTGGTCGCGGCCACGG GGGCATGTGGAATGCCGTGCGCAAGGAGGTGAAGGCGTGGTTCAGAATTTC
genomic: GATGGGTGGAAATGTCGGGGAGAACGTCGTGGTCGCGGCCACGGgtaatggttt ... aattcggtagGGGCATGTGGAATGCCGTGCGCAAGGAGGTGAAGGCGTGGTTCAGAATTTC
cgttcctgagaagctttgtgctgatgattggtttatttgtggtggaattcggtagGGGCATGTGGAATGCCGTGCGCAAGGAGGTGAAGGCGTGGTTCAGAATTTCGATGACAGTAGGCGACAGAATGAATCTTGGAGAGCTTATGCCTTTGGTG
tgctgat putative branch site (score: 6)
tttatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attccgtgtgacagatacggagagatgaaacgaccagtgttgattcgttcctgagaagctttgtgctgatgattggtttatttgtggtggaattcggtagGGGCATGTGGAATGCCGTGCGCAAGGAGGTGAAGGCGTGGTTCAGAATTTCGATGACAGTAGGCGACAGAATGAATCTTGGAGAGCTTATGCCTTTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT