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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgctgtacgctccgcatattctctctcgtacaatgctgctgatgttgccgttccaggggtggaattattttggacgtgcttgcatttgcagtgttggagaggactaactgcttgcttcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT

Basic information

species Physcomitrella patens
transcript PP1S31_322V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 1
gtgtgctgtacgctccgcatattctctct-cgtacaatgctgctgatgttgccgttccaggggtggaattattttggacgtgcttgcatttgcagtgttggagaggactaactgcttgcttcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT
  || |      |||| | |   ||| |  ||  | | |  |  |       |    | ||   |   ||  ||    || | ||  || ||   | |||  |  | |   ||| |    | |||||||| |||| ||||| || || ||||| ||||||||||||||| |||||||||||||||||   |||||
--gtacccatttctcctcctcccctccccgcgggcgacgtggtcgtctcgatccggtccggctggttgtttcttgtagcgcggtttgatctg--attttgtggtcgcc---ctgatgatgttttgcgcagTTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 1
gtgtgctgtacgctccgcatattctctctcgtacaatgctgctgatgttgccgttccaggggtggaattattttggacgtgcttgcatttgcagtgttggagaggactaactgcttgcttcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT
    |    ||||||| | |   |  |   | |     | | |||  | |   ||  | ||  ||  |   |||     |  || | |  |  |  |  ||   |  |   | |   |||| |   ||| |||| ||||| || || ||||| ||||||||||||||| |||||||||||||||||   |||||
----gtaagacgctcctcgtcgccgttgctggatcccccagatgagctagggattttatggtagggttagattt-----ttttttcgtgggtggcttctgattcgtgtggtttccgccttcgttttcagTTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
----------------------gtgtgctgtac-gct-ccgcatattctctctcgtacaatgctgctgatgttgc---cgttccaggggtggaatta-ttttggacgtgcttgcatttgcagtgttggagaggactaactgctt-gcttcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT
                      || |  | ||  |||  || || ||||||||  |||   | |  |  | ||||   |||| | |  || |  ||| |||   |    |    || || | | || |      |     |||| ||  |||  |||| |||| ||||| ||||||||||| || |||||||||||| |||||||||| |||||    || ||
gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcgttttaatttcttattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT

upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 1
gtgtgctgtacgctccgcatattctctctcgtacaatgctgctgatgttgccgttccaggggtggaattattttggacgtgcttgcat-ttgcagtgttggagaggactaactgcttgcttcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT
                                                ||  ||  | |      ||||  ||    |||| ||| || ||   ||||| |        |  || | | || |   |||| |||| || || ||||||||||| ||||||||||||||| | || ||||||||||||   |||||
-----------------------------------------------gtgttgtctctgaaccctaattgcttc---cgtgtttggatatttgtgtgtttgtcgctgaaacatgttcggttttgctgcagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT

upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA07G31840.2 (Glycine max), 3'ss of exon 1
gtgtgctgtacgctccgcatattctctctcgtacaatgctgctgatgttgccgttccaggggtggaattattttggacgtgcttgcatttgca-gtgttggagaggactaactgcttgcttcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT
                                                ||  ||  |        ||||  ||    | || ||| ||||    |||||          |  |  | | || ||   ||| |||| || || ||||||||||| ||||||||||||||| | || ||||||||||||   |||||
-----------------------------------------------gtgttgtctctaaaccctaattgcttc---cctgtttggatttttgtgtgtttatcgctgaaacatattcgatttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCT

upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 1
gtgtgctgtacgctccgcatattctctctcgtacaatgctgctgatgttgccgttccaggggtggaattattttggacgtgcttgcatttgca-gtgttggagaggactaactgcttgcttcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT-----------------------------------
                                                ||  ||  |        ||||  ||    | || ||| ||||    |||||          |  |  | | || ||   ||| |||| || || ||||||||||| ||||||||||||||| | || ||||||||||||   |||||                                   
-----------------------------------------------gtgttgtctctaaaccctaattgcttc---cctgtttggatttttgtgtgtttatcgctgaaacatattcgatttttctacagTTCAACATTGCAAATCCCACCACTGGGTGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTGTAATCATTTCACTCTCTCTTCAATTTTCATTTGT

upper sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 1
gtgtgctgtacgctccgcatattctctctcgtacaatgctgctgatgttgccgttccaggggtggaattattttggacgtgcttgcatttgcagtgttggagaggactaactgcttgcttcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT
                            |||  | | |      |  ||||  |||  |   |      ||| |  |     |   |     | | |       ||    |||  ||  | ||||  || |||||||||| ||||| |||||||| |||||||||||| | ||||| || || |||   || ||
--------------------------gttcgatccacgaaaaccaatttgcaattcatgatctccggccattcttcaatgtttcaaaaccctaattt-------gatattctgtgtgtgttttgc--agTTCAATATCGCGAATCCGACCACAGGATGCCAGAAGAAGCTTGAGATTGACGATGACCAGAAACT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162251234|gb|FC428513.1|FC428513
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|18373166|gb|BJ204768.1|BJ204768
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|22491706|gb|BU051629.1|BU051629
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162268717|gb|FC445214.1|FC445214
EST:     CCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: CCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|18350908|gb|BJ182959.1|BJ182959
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|18359549|gb|BJ191610.1|BJ191610
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|208352202|gb|DC906305.1|DC906305
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|18350278|gb|BJ182329.1|BJ182329
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162247834|gb|FC423414.1|FC423414
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|18354830|gb|BJ186889.1|BJ186889
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|67719729|gb|BJ969988.1|BJ969988
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|18326974|gb|BJ158975.1|BJ158975
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162237537|gb|FC413009.1|FC413009
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|208344627|gb|DC912573.1|DC912573
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|18362285|gb|BJ194355.1|BJ194355
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|208389256|gb|DC933284.1|DC933284
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|67702724|gb|BJ962957.1|BJ962957
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162231479|gb|FC407929.1|FC407929
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162275508|gb|FC451276.1|FC451276
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162269830|gb|FC445373.1|FC445373
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|208397139|gb|DC908153.1|DC908153
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|208367071|gb|DC935913.1|DC935913
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|18372723|gb|BJ204325.1|BJ204325
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162222642|gb|FC397454.1|FC397454
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|18325052|gb|BJ157048.1|BJ157048
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|18350569|gb|BJ182620.1|BJ182620
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162262634|gb|FC438962.1|FC438962
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162229719|gb|FC405147.1|FC405147
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162280474|gb|FC456387.1|FC456387
EST:     TGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: TGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162276605|gb|FC452183.1|FC452183
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|18369604|gb|BJ201692.1|BJ201692
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTTGCCAGAAGAAGGTCGAGATCGA
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGG-TGCCAGAAGAAGGTCGAGATCGA
EST: gi|67571071|gb|BJ943895.1|BJ943895
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|67702706|gb|BJ962939.1|BJ962939
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162202122|gb|FC377523.1|FC377523
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|18329230|gb|BJ161236.1|BJ161236
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|67703838|gb|BJ964071.1|BJ964071
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|162220964|gb|FC396149.1|FC396149
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
EST: gi|67719854|gb|BJ970113.1|BJ970113
EST:     GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAG                         CTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT
genomic: GTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 59

CGTCCTCGATGAAGCTCTTTCGCGAGGACCTCGATTGCTGCTTAGGCCGCGTAATCCGCCATCGCCTCGCTTGTGAAGGCGCTCAGCTTTAACCATGAAGgtgtgctgta ... tcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggacgtgcttgcatttgcagtgttggagaggactaactgcttgcttcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT
                              gactaac  putative branch site (score: 59)
                                       cttgcttctt  putative PPT
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtgctgtacgctccgcatattctctctcgtacaatgctgctgatgttgccgttccaggggtggaattattttggacgtgcttgcatttgcagtgttggagaggactaactgcttgcttcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC