1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctaggtgtgactttctgcgccttttctctgacttttatctgcctcgtaaatcatccgtattctttttctaaagcagtttgaaatgtttttgttgtgtcagGGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAAATGCCGCTTGCGGACTTCTTTTATCTTTCTCCTTAGCAACTGCATCACC
species | Physcomitrella patens |
transcript | PP1S319_46V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTC GGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAAEST: gi|7067149|gb|AW497004.1|AW497004
genomic: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTCgtaagctcct ... gttgtgtcagGGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAA
EST: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTC GGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAAEST: gi|7207426|gb|AW561428.1|AW561428
genomic: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTCgtaagctcct ... gttgtgtcagGGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAA
EST: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTC GGGAAGGTAGGGACTCGAAGGAGGTGGTGTCAACAGCTGAGGCATTTAAAAEST: gi|162248517|gb|FC425293.1|FC425293
genomic: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTCgtaagctcct ... gttgtgtcagGGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAA
EST: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTC GGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAAEST: gi|162260313|gb|FC435616.1|FC435616
genomic: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTCgtaagctcct ... gttgtgtcagGGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAA
EST: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTC GGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAAEST: gi|7147910|gb|AW509832.1|AW509832
genomic: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTCgtaagctcct ... gttgtgtcagGGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAA
EST: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTC GGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAAEST: gi|162226255|gb|FC402963.1|FC402963
genomic: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTCgtaagctcct ... gttgtgtcagGGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAA
EST: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTC GGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAAEST: gi|208353885|gb|DC942783.1|DC942783
genomic: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTCgtaagctcct ... gttgtgtcagGGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAA
EST: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTC GGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAA
genomic: CACTGCCTCCGCCTCCACCCGCATCGCCCTCCCTCCCGTCCATTGCTCTCgtaagctcct ... gttgtgtcagGGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAA
gtaaatcatccgtattctttttctaaagcagtttgaaatgtttttgttgtgtcagGGGAAGGTAGGGACTCGAAGGAGGTGGTGTCGACAGCTGAGGCATTTAAAAATGCCGCTTGCGGACTTCTTTTATCTTTCTCCTTAGCAACTGCATCACC
ttctaaa putative branch site (score: 19)
tttttgtt putative PPT
tattctttttctaaa TA-rich tract