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1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggtgtggtggaattgatgggttaaggcagggttgtgttatgtctttgggttttgcgaggttggtgaagggattgtgagagcgagatagagaaatagagtaaggattttgtcgggggcgtttggtgatgtgtttgcgatgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAGTTCTTCGTCGGGGGCAACTGGAAGTGCAATGGCACGACTGAGAGCATTA

Basic information

species Physcomitrella patens
transcript PP1S317_25V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S317_25V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM5G852968_T01 (Zea mays), 3'ss of exon 1
gtaagggtgtggtggaattgatgggttaaggcagggttg-tgttatgtctttgggttttgcgaggttggtgaagggattgtgagagcgagatagagaaatagagtaaggattttgtcgggggcgtttggtgatgtgtttgcg-atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAGTTCTTCGTCGGGGGCAACTGGAAGTGCAATGGCACGACTGAGAGCATTA
             |         |  |  | |   |  | ||||    | |  |    || |  ||  | |       |      ||   ||       |  |||      || ||||| |||   |||   || ||  | | ||||        | | | |  | |  ||  ||   |  | |  |  | ||   ||||| | | ||                                             
-------------gtgcgccgccgcctccgccgccgccgctgtttaaccgtctgcccatgtggtgtctgcgctcatgctccc---gcttcatttttctttgcagTT----CTTCGTCGGAGGCAACTGGAAGTGCGTAAGTGCATGTTCTGCTTCTTCAGCTTTACGCGGCTTGGAGATGCTGTGTACCGATGATCCTGGAGA-TGCTG--------------------------------------------

upper sequence: PP1S317_25V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G002807_T01 (Zea mays), 3'ss of exon 1
gtaagggtgtggtggaattgatgggttaaggcagggttgtgttatgtctttgggttttgcgaggttggtgaagggattgtgagagcgagatagagaaatagagtaaggattttgtcgggggcgtttggtgatgtgtttgcgatgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAGTTCTTCGTCGGGGGCAACTGGAAGTGCAATGGCACGACTGAGAGCATTA
                                                                                                      ||  |      | ||  |   |||    |   || |   || ||  |    || |  | | | |  || |     |  |  | || ||     | | | |||||||||||| |||||||||||||||                      
------------------------------------------------------------------------------------------------------gtgcgc-cgccgccgccgttctttaaccagccgtctttaatctgcccc---tgtgatttctgcgctcatg-----ctcccgcttgactctcctttgca-gTTCTTCGTCGGAGGCAACTGGAAGTGC----------------------

upper sequence: PP1S317_25V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM5G852968_T02 (Zea mays), 3'ss of exon 1
gtaagggtgtggtggaattgatgggttaaggcagggttgtgttatgtctttgggttttgcgaggttggtgaagggattgtgagagcgagatagagaaatagagtaaggattttgtcgggggcgtttggtgatgtgtttgcgatgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAGTTCTTCGTCGGGGGCAACTGGAAGTGCAATGGCACGACTGAGAGCATTA
                                                                                                  |        |  |  | ||  | || |   | |   || |||      ||  | ||  | |  || |   | |         || |||   |    ||    ||||||||||||| |||||||||||||||                      
-------------------------------------------------------------------------------------------------gtgcgccgccgcctccgccgccgccgctgtttaac-cgtctgcc---catgtggtgtctgcgctcatgctcccg---------cttcattttt----ctttgcagTTCTTCGTCGGAGGCAACTGGAAGTGC----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67702201|gb|BJ962434.1|BJ962434
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGG
EST: gi|100427661|gb|BY977609.1|BY977609
EST:     ATGTCGCCAACGGGTCATCTTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGG-TACCGGTAGCTGGGGAGTC
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTC
EST: gi|100374674|gb|BY949016.1|BY949016
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100441070|gb|BY980691.1|BY980691
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100361289|gb|BY947008.1|BY947008
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208372046|gb|DC940228.1|DC940228
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|18369124|gb|BJ201209.1|BJ201209
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100445836|gb|CJ970135.1|CJ970135
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|162235443|gb|FC411578.1|FC411578
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208357821|gb|DC902331.1|DC902331
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208358252|gb|DC930693.1|DC930693
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|18364558|gb|BJ196631.1|BJ196631
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|162232533|gb|FC408382.1|FC408382
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100388853|gb|BY988729.1|BY988729
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100444728|gb|BY982557.1|BY982557
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|18360291|gb|BJ192353.1|BJ192353
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100452990|gb|CJ975545.1|CJ975545
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|18360436|gb|BJ192498.1|BJ192498
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|18365811|gb|BJ197889.1|BJ197889
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100442683|gb|BY981508.1|BY981508
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208389621|gb|DC933665.1|DC933665
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208354035|gb|DC930147.1|DC930147
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100439331|gb|BY980210.1|BY980210
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|162175685|gb|FC351272.1|FC351272
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100448891|gb|CJ973190.1|CJ973190
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100371255|gb|BY986014.1|BY986014
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208392726|gb|DC942408.1|DC942408
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208373362|gb|DC941015.1|DC941015
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100385520|gb|BY969857.1|BY969857
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208362454|gb|DC939462.1|DC939462
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|18372732|gb|BJ204334.1|BJ204334
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100423278|gb|BY958217.1|BY958217
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGGGCAGGGGAGTCGTCTCCATGGCTGGAACTGGGAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208372065|gb|DC940247.1|DC940247
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|162262302|gb|FC437629.1|FC437629
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100381819|gb|BY950188.1|BY950188
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|162163666|gb|FC340278.1|FC340278
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|162278387|gb|FC454473.1|FC454473
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|18366678|gb|BJ198757.1|BJ198757
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208346317|gb|DC905264.1|DC905264
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208397785|gb|DC912008.1|DC912008
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|67573753|gb|BJ946577.1|BJ946577
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208370415|gb|DC936421.1|DC936421
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208359176|gb|DC934679.1|DC934679
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208374725|gb|DC932022.1|DC932022
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCGG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208361477|gb|DC935136.1|DC935136
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208370323|gb|DC931735.1|DC931735
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|67702806|gb|BJ963039.1|BJ963039
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGG
EST: gi|100410536|gb|BY992151.1|BY992151
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100377271|gb|BY968445.1|BY968445
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100389933|gb|BY971285.1|BY971285
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|162162579|gb|FC338673.1|FC338673
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208362956|gb|DC957939.1|DC957939
EST:     CATCGTTCGGGGCAGTCTTGTCTCAAC-GNTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: CATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100384778|gb|BY950768.1|BY950768
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100353737|gb|BY983285.1|BY983285
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100352854|gb|BY945483.1|BY945483
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208394179|gb|DC929666.1|DC929666
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100442298|gb|BY981322.1|BY981322
EST:     TGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTNCA-CGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAA
genomic: TGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCT-CAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAA-
EST: gi|18367687|gb|BJ199770.1|BJ199770
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|208344835|gb|DC912669.1|DC912669
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100424479|gb|BY958508.1|BY958508
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
EST: gi|100401330|gb|BY990948.1|BY990948
EST:     ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAG                         AGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG
genomic: ATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 35 (downstream exon)
Score: 19

ACCCTCTTCGTCGCTCGCGCGCCCCCAATTCGCTGGACTGCGCCGTGCTGATGTCGCCAACGAGTCATCGTTCGGGGCAGTCTTGTCTCAACGGTTGCAGgtaagggtgt ... atgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAGTTCTTCGTCGGGGGCAACTGGAAGTGCAATGGCACGACTGAGAGCATTA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatagagtaaggattttgtcgggggcgtttggtgatgtgtttgcgatgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAGTTCTTCGTCGGGGGCAACTGGAAGTGCAATGGCACGACTGAGAGCATTA
            attttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagggtgtggtggaattgatgggttaaggcagggttgtgttatgtctttgggttttgcgaggttggtgaagggattgtgagagcgagatagagaaatagagtaaggattttgtcgggggcgtttggtgatgtgtttgcgatgtgtgcagAGTGCGGGTACAGGGAGCAGGGGAGTCGTCTCCATGGCTGGAACTGGAAAGTTCTTCGTCGGGGGCAACTGGAAGTGCAATGGCACGACTGAGAGCATTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA