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...ttgtgattgggatatctacatcacaatcgcggctcattgcgtctgatttacaggctctgaatagtcctgtctctcatgatgaaagattgcgtttattcagGTCAAGGATATGTTTTACCATGGGTTCGACAATTATATGGAATATGCATTTCCTCTGGATGAACTAAGACCTATGAGCTGCACTGGTGAAGACTCGCTCG
species | Physcomitrella patens |
transcript | PP1S313_34V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTACAGCTGCCTCTGTTTCCGCCCGCGAAGCCGCCGATCTGCGCGATGAG GTCAAGGATATGTTTTACCATGGGTTCGACAATTATATGGAATATGCATTTEST: gi|18325188|gb|BJ157184.1|BJ157184
genomic: CTACAGCTGCCTCTGTTTCCGCCCGCGAAGCCGCCGATCTGCGCGATGAGgtgggtcacc ... gtttattcagGTCAAGGATATGTTTTACCATGGGTTCGACAATTATATGGAATATGCATTT
EST: CTACAGCTGCCTCTGTTTCCGCCCGCGAAGCCGCCGATCTGCGCGATGAG GTCAAGGATATGTTTTACCATGGGTTCGACAATTATATGGAATATGCATTTEST: gi|18365984|gb|BJ198062.1|BJ198062
genomic: CTACAGCTGCCTCTGTTTCCGCCCGCGAAGCCGCCGATCTGCGCGATGAGgtgggtcacc ... gtttattcagGTCAAGGATATGTTTTACCATGGGTTCGACAATTATATGGAATATGCATTT
EST: CTACAGCTGCCTCTGTTTCCGCCCGCGAAGCCGCCGATCTGCGCGATGAG GTCAAGGATATGTTTTACCATGGGTTCGACAATTATATGGAATATGCATTTEST: gi|100402849|gb|BY973382.1|BY973382
genomic: CTACAGCTGCCTCTGTTTCCGCCCGCGAAGCCGCCGATCTGCGCGATGAGgtgggtcacc ... gtttattcagGTCAAGGATATGTTTTACCATGGGTTCGACAATTATATGGAATATGCATTT
EST: CTACAGCTGCCTCTGTTTCCGCCCGCGAAGCCGCCGATCTGCGCGATGAG GTCAAGGATATGTTTTACCATGGGTTCGACAATTATATGGAATATGCATTT
genomic: CTACAGCTGCCTCTGTTTCCGCCCGCGAAGCCGCCGATCTGCGCGATGAGgtgggtcacc ... gtttattcagGTCAAGGATATGTTTTACCATGGGTTCGACAATTATATGGAATATGCATTT
atttacaggctctgaatagtcctgtctctcatgatgaaagattgcgtttattcagGTCAAGGATATGTTTTACCATGGGTTCGACAATTATATGGAATATGCATTTCCTCTGGATGAACTAAGACCTATGAGCTGCACTGGTGAAGACTCGCTCG
gtctgat putative branch site (score: 3)
tttattc putative PPT
tttattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgattgggatatctacatcacaatcgcggctcattgcgtctgatttacaggctctgaatagtcctgtctctcatgatgaaagattgcgtttattcagGTCAAGGATATGTTTTACCATGGGTTCGACAATTATATGGAATATGCATTTCCTCTGGATGAACTAAGACCTATGAGCTGCACTGGTGAAGACTCGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA