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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctattttagctcttgttttaattcttcgtcatcattgatataaaaaatgttctgcggagggacatttcttttgacccttgatttttgcttggtgtagCTACCACATTGACAAGCTGGCATCTGGCTGTGACATTCTGCTCACTCCATGTTGCGCGATCGTTGAAACTATTTGAACACAAGCCCTTCGATTTACGGAC

Basic information

species Physcomitrella patens
transcript PP1S311_78V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100414200|gb|BY992660.1|BY992660
EST:     CATCGTTATCTGTAACAAGACTCTCATTACCACGCTTGGTTTCTGCTTCG                         CTACCACATTGACAAGCTGGCATCTGGCTGTGACATTCTGCTCACTCCATG
genomic: CATTGTTATCTGTAACAAGACTCTCATTACCACGCTTGGTTTCTGCTTCGgtacgagagt ... cttggtgtagCTACCACATTGACAAGCTGGCATCTGGCTGTGACATTCTGCTCACTCCATG
EST: gi|100386538|gb|BY951334.1|BY951334
EST:     CATTGTTATCTGTAACAAGACTCTCATTACCACGCTTGGTTTCTGCTTCG                         CTACCACATTGACAAGCTGGCATCTGGCTGTGACATTCTGCTCACTCCATG
genomic: CATTGTTATCTGTAACAAGACTCTCATTACCACGCTTGGTTTCTGCTTCGgtacgagagt ... cttggtgtagCTACCACATTGACAAGCTGGCATCTGGCTGTGACATTCTGCTCACTCCATG
EST: gi|208363875|gb|DC943332.1|DC943332
EST:     CATTGTTATCTGTAACAAGACTCTCATTACCACGCTTGGTTTCTGCTTCG                         CTACCACATTGACAAGCTGGCATCTGGCTGTGACATTCTGCTCACTCCATG
genomic: CATTGTTATCTGTAACAAGACTCTCATTACCACGCTTGGTTTCTGCTTCGgtacgagagt ... cttggtgtagCTACCACATTGACAAGCTGGCATCTGGCTGTGACATTCTGCTCACTCCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaatgttctgcggagggacatttcttttgacccttgatttttgcttggtgtagCTACCACATTGACAAGCTGGCATCTGGCTGTGACATTCTGCTCACTCCATGTTGCGCGATCGTTGAAACTATTTGAACACAAGCCCTTCGATTTACGGAC
                                       tttttgctt  CT-rich tract
                     atttctttt  TA-rich tract