1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagcagcgccccgcaatgctttagtgatctttggttggttccatttctacgtatggttagggcgtttgttaagctagtagcagagtgaacgttacgagtcactgaccttgtcctgctactatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT
species | Physcomitrella patens |
transcript | PP1S311_33V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|208350926|gb|DC910473.1|DC910473
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|18374415|gb|BJ205993.1|BJ205993
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|19785812|gb|BQ040399.1|BQ040399
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|18373396|gb|BJ204974.1|BJ204974
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|67575041|gb|BJ947865.1|BJ947865
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|208359876|gb|DC934877.1|DC934877
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|208377690|gb|DC932226.1|DC932226
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|162239498|gb|FC417963.1|FC417963
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|18373564|gb|BJ205142.1|BJ205142
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|67571348|gb|BJ944172.1|BJ944172
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|18367978|gb|BJ200062.1|BJ200062
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|162271071|gb|FC446098.1|FC446098
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|18355513|gb|BJ187572.1|BJ187572
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGGAGAAAGTCGAGATCGATEST: gi|162235066|gb|FC411201.1|FC411201
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|18342104|gb|BJ174139.1|BJ174139
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|208386094|gb|DC949005.1|DC949005
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: AGGCAACCAGCTNTAGTCATGAAG CT-AATATCGCTAACCCCANTAC-GGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|18371929|gb|BJ203531.1|BJ203531
genomic: AGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|162279666|gb|FC455899.1|FC455899
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: GCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|67574954|gb|BJ947778.1|BJ947778
genomic: GCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: CGCCATCGCGTTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATEST: gi|18352184|gb|BJ184238.1|BJ184238
genomic: CGCCATCGCG-TCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
EST: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAG CTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
genomic: TCGCCATCGCGTCCTCTTGGTCGTGAAGGCAACCAGCTCTAGTCATGAAGgtcagcagcg ... ctatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGAT
ctagtagcagagtgaacgttacgagtcactgaccttgtcctgctactatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT
cactgac putative branch site (score: 39)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcagcgccccgcaatgctttagtgatctttggttggttccatttctacgtatggttagggcgtttgttaagctagtagcagagtgaacgttacgagtcactgaccttgtcctgctactatgcgcagCTAAATATCGCTAACCCCACTACGGGGTGTCAGAAGAAAGTCGAGATCGATGACGATGCCAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT