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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatggagagggttggattgggttggcttttttggggtgggaatggggtggtgggattgcaaaggggtgttgttggtgaggaagtgggacgcagaggtggagttgacgttggggtttggattttgcatgtggcggttgctcatatggtttcactggatcagTTCGAGATCTGCCTTGGTGAGTTTTCCCCTGGGACATTTTGCGGAACCAAGTGTATCGGCTTGCTCTTCGAGTTTTTTTGGCATTTTGGATATTTTTCGG

Basic information

species Physcomitrella patens
transcript PP1S310_50V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256010|gb|FC431774.1|FC431774
EST:     AGTTGCGGGAGGCTTTCGGTGGTGGTGTTTTGCGTTGCTTGGCTGCTCAG                         TTCGAGATCTGCCTTGGTGAGTTTTCCCCTGGGACATTTTGCGGAACCAAG
genomic: AGTTGCGGGAGGCTTTCGGTGGTGGTGTTTTGCGTTGCTTGGCTGCTCAGgtatgatgga ... actggatcagTTCGAGATCTGCCTTGGTGAGTTTTCCCCTGGGACATTTTGCGGAACCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttggggtttggattttgcatgtggcggttgctcatatggtttcactggatcagTTCGAGATCTGCCTTGGTGAGTTTTCCCCTGGGACATTTTGCGGAACCAAGTGTATCGGCTTGCTCTTCGAGTTTTTTTGGCATTTTGGATATTTTTCGG
                                         tttcact  CT-rich tract
             atttt  TA-rich tract