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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaataggattctacacgctagtgaattgtcatacaagaacaatttccaaagatgtaaacgaaatatgtgatttaaccacaacggttgtggcctttacagTGGGAGATTGTGTCTTGATGCGTGGGCAAGATCCTGATAAGCCACCTTACGTTGCCAAGATAGAGAAGATTGAGGCTGACAACAGAAACAATACTAAAGT

Basic information

species Physcomitrella patens
transcript PP1S307_14V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162178126|gb|FC354428.1|FC354428
EST:     GAAAGCTCTCGACTCGTACACCGTGAAAGGCACACAGAAGGTCGTGAAAG                         TGGGAGATTGTGTCTTGATGCGTGGGCAAGATCCTGATAAGCCACCTTACG
genomic: GAAAGCTCTCGACTCGTACACCGTGAAAGGCACACAGAAGGTCGTGAAAGgtgagtttgg ... gcctttacagTGGGAGATTGTGTCTTGATGCGTGGGCAAGATCCTGATAAGCCACCTTACG
EST: gi|100427687|gb|BY977622.1|BY977622
EST:     GAAAGCTCTCGACTCGTACACCGTGAAAGGCACACAGAAGGTCGTGAAAG                         TGGGAGATTGTGTCTTGATGCGTGGGCAAGATCCTGATAAGCCACCTTACG
genomic: GAAAGCTCTCGACTCGTACACCGTGAAAGGCACACAGAAGGTCGTGAAAGgtgagtttgg ... gcctttacagTGGGAGATTGTGTCTTGATGCGTGGGCAAGATCCTGATAAGCCACCTTACG
EST: gi|100357465|gb|BY983992.1|BY983992
EST:     GAAAGCTCTCGACTCGTACACCGTGAAAGGCACACAGAAGGTCGTGAAAG                         TGGGAGATTGTGTCTTGATGCGTGGGCAAGATCCTGATAAGCCACCTTACG
genomic: GAAAGCTCTCGACTCGTACACCGTGAAAGGCACACAGAAGGTCGTGAAAGgtgagtttgg ... gcctttacagTGGGAGATTGTGTCTTGATGCGTGGGCAAGATCCTGATAAGCCACCTTACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccaaagatgtaaacgaaatatgtgatttaaccacaacggttgtggcctttacagTGGGAGATTGTGTCTTGATGCGTGGGCAAGATCCTGATAAGCCACCTTACGTTGCCAAGATAGAGAAGATTGAGGCTGACAACAGAAACAATACTAAAGT
                         atttaac  putative branch site (score: 3)
                                              cctttac  putative PPT
                aaatatgtgatttaa  TA-rich tract