1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aaatcgaatgtatcatgctggttttcctatgggctgcgctactattatcacgttgtatttctgaattattaaagtgtacgacggattctttgacatgcagCCAGGGAATTCTGCCAGAATTATACGTACTAAAGTAGAAATTTACGTTTCGGGGACTTCGAGTCTTCTATGGCATCTGCGACTGCGGGTATTATCAACAG
species | Physcomitrella patens |
transcript | PP1S306_43V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGATGTGTGGTCGGTGGAGTTAGCTTCTACGGGCAACTGGAAAT CCAGGGAATTCTGCCAGAATTATACGTACTAAAGTAGAAATTTACGTTTCGEST: gi|18344442|gb|BJ176482.1|BJ176482
genomic: GTGATGTGTGGTCGGTGGAGTTAGCTTCTACGGGCAACTGGAAATgtaagcttct ... tgacatgcagCCAGGGAATTCTGCCAGAATTATACGTACTAAAGTAGAAATTTACGTTTCG
EST: GGCATGTGATGTGTGGTCGGTGGAGTTAGCTTCTACGGGCAACTGGAAAT CCAGGGAATTCTGCCAGAATTATACGTACTAAAGTAGAAATTTACGTTTCG
genomic: GGCATGTGATGTGTGGTCGGTGGAGTTAGCTTCTACGGGCAACTGGAAATgtaagcttct ... tgacatgcagCCAGGGAATTCTGCCAGAATTATACGTACTAAAGTAGAAATTTACGTTTCG
tatcacgttgtatttctgaattattaaagtgtacgacggattctttgacatgcagCCAGGGAATTCTGCCAGAATTATACGTACTAAAGTAGAAATTTACGTTTCGGGGACTTCGAGTCTTCTATGGCATCTGCGACTGCGGGTATTATCAACAG
ctttgac putative branch site (score: 4)
ttcttt CT-rich tract
ttgtatttctgaatta TA-rich tract