1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctggtctctctgttcaggcttgcctggatgtgagtgtcttcatacgcaattgagcaatacgttcctgtttgctcacctatccctgtgtttcccgtgcagGTAAGCCTCAGTGCGTTTGCATTCTTGTTTTCAGAGCTGGTGCAGTACAACCAAGGAAAAGTTGAAAATATTGCAGAATTGGAACACAG
species | Physcomitrella patens |
transcript | PP1S303_47V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAGAACTTGAATGTGGTTGACAGGCCCCTCGGGAAGGGCAAATCTGAG GTAAGCCTCAGTGCGTTTGCATTCTTGTTTTCAGAGCTGGTGCAGTACAACEST: gi|7067053|gb|AW496908.1|AW496908
genomic: AGCAGAACTTGAATGTGGTTGACAGGCCCCTCGGGAAGGGCAAATCTGAGgtgagtttgt ... tcccgtgcagGTAAGCCTCAGTGCGTTTGCATTCTTGTTTTCAGAGCTGGTGCAGTACAAC
EST: AGCAGAACTTGAATGTGGTTGACAGGCCCCTCGGGAAGGGCAAATCTGAG GTAAGCCTCAGTGCGTTTGCATTCTTGTTTTCAGAGCTGGTGCAGTACAACEST: gi|162226760|gb|FC403806.1|FC403806
genomic: AGCAGAACTTGAATGTGGTTGACAGGCCCCTCGGGAAGGGCAAATCTGAGgtgagtttgt ... tcccgtgcagGTAAGCCTCAGTGCGTTTGCATTCTTGTTTTCAGAGCTGGTGCAGTACAAC
EST: AGCAGAACTTGAATGTGGTTGACAGGCCCCTCGGGAAGGGCAAATCTGAG GTAAGCCTCAGTGCGTTTGCATTCTTGTTTTCAGAGCTGGTGCAGTACAACEST: gi|162226761|gb|FC403807.1|FC403807
genomic: AGCAGAACTTGAATGTGGTTGACAGGCCCCTCGGGAAGGGCAAATCTGAGgtgagtttgt ... tcccgtgcagGTAAGCCTCAGTGCGTTTGCATTCTTGTTTTCAGAGCTGGTGCAGTACAAC
EST: AGCAGAACTTGAATGTGGTTGACAGGCCCCTCGGGAAGGGCAAATCTGAG GTAAGCCTCAGTGCGTTTGCATTCTTGTTTTCAGAGCTGGTGCAGTACAAC
genomic: AGCAGAACTTGAATGTGGTTGACAGGCCCCTCGGGAAGGGCAAATCTGAGgtgagtttgt ... tcccgtgcagGTAAGCCTCAGTGCGTTTGCATTCTTGTTTTCAGAGCTGGTGCAGTACAAC
cgcaattgagcaatacgttcctgtttgctcacctatccctgtgtttcccgtgcagGTAAGCCTCAGTGCGTTTGCATTCTTGTTTTCAGAGCTGGTGCAGTACAACCAAGGAAAAGTTGAAAATATTGCAGAATTGGAACACAG
tgctcac putative branch site (score: 10)
tccctgtgtttccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctggtctctctgttcaggcttgcctggatgtgagtgtcttcatacgcaattgagcaatacgttcctgtttgctcacctatccctgtgtttcccgtgcagGTAAGCCTCAGTGCGTTTGCATTCTTGTTTTCAGAGCTGGTGCAGTACAACCAAGGAAAAGTTGAAAATATTGCAGAATTGGAACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA