1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acatcgtacgcagtaggatgctcaagaggctctgatgtatggcctatctatgacagttttgaccatttcttatcctgatgaggatgattatactctgtagGCAGAAGGTTATTCGATGAGTTAGATCGCGACAGTGACGGGCAGGTGACTCTTGAAGACCTTGAAGTAGCTATGAAGAAGCGAAGATTGCCTCTGCGTTA
species | Physcomitrella patens |
transcript | PP1S2_777V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAAGAAGTTGACATCAGTGCAGGACTTTTTTAGATACACGGAAGCCGAAG GCAGAAGGTTATTCGATGAGTTAGATCGCGACAGTGACGGGCAGGTGACTCEST: gi|162257492|gb|FC433535.1|FC433535
genomic: GAAGAAGTTGACATCAGTGCAGGACTTTTTTAGATACACGGAAGCCGAAGgtaaggactt ... tactctgtagGCAGAAGGTTATTCGATGAGTTAGATCGCGACAGTGACGGGCAGGTGACTC
EST: GAAGAAGTTGACATCAGTGCAGGACTTTTTTAGATACACGGAAGCCGAAG GCAGAAGGTTATTCGATGAGTTAGATCGCGACAGTGACGGGCAGGTGACTC
genomic: GAAGAAGTTGACATCAGTGCAGGACTTTTTTAGATACACGGAAGCCGAAGgtaaggactt ... tactctgtagGCAGAAGGTTATTCGATGAGTTAGATCGCGACAGTGACGGGCAGGTGACTC
atctatgacagttttgaccatttcttatcctgatgaggatgattatactctgtagGCAGAAGGTTATTCGATGAGTTAGATCGCGACAGTGACGGGCAGGTGACTCTTGAAGACCTTGAAGTAGCTATGAAGAAGCGAAGATTGCCTCTGCGTTA
tcctgat putative branch site (score: 1)
atttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatcgtacgcagtaggatgctcaagaggctctgatgtatggcctatctatgacagttttgaccatttcttatcctgatgaggatgattatactctgtagGCAGAAGGTTATTCGATGAGTTAGATCGCGACAGTGACGGGCAGGTGACTCTTGAAGACCTTGAAGTAGCTATGAAGAAGCGAAGATTGCCTCTGCGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA