1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttagcattccatccattccttctgctccggactcagtgcatttgttagttaggattatttcaaaggtgttacatcttcgatgctgctccttgtgatttggatgggacatgcaatgtcagctgtgtgaatagttgtttttggcaattgttaggttttactgttgatgatcctcactgaggattgcatgatttgctagGTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAGAAGCACACCCTCCACAAGGTCACTCAGTACAAGAAGGGAAAGGATAGTC
species | Physcomitrella patens |
transcript | PP1S2_415V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGTTGGCGAGGCAAGGCGGTCACCATG GTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAGEST: gi|18360544|gb|BJ192607.1|BJ192607
genomic: GTGTTGGCGAGGCAAGGCGGTCACCATGgttagcattc ... gatttgctagGTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAG
EST: GCTGACTGCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATG GTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAGEST: gi|18369452|gb|BJ201539.1|BJ201539
genomic: GCTGACTGCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATGgttagcattc ... gatttgctagGTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAG
EST: GCTGACTGCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATG GTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAGEST: gi|37838261|gb|BJ596269.1|BJ596269
genomic: GCTGACTGCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATGgttagcattc ... gatttgctagGTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAG
EST: GCTGACTGCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATG GTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAGEST: gi|18363955|gb|BJ196028.1|BJ196028
genomic: GCTGACTGCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATGgttagcattc ... gatttgctagGTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAG
EST: GCTGACTGCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATG GTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAGEST: gi|162230564|gb|FC407154.1|FC407154
genomic: GCTGACTGCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATGgttagcattc ... gatttgctagGTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAG
EST: GCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATG GTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAGEST: gi|162202251|gb|FC377587.1|FC377587
genomic: GCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATGgttagcattc ... gatttgctagGTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAG
EST: TGCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATG GTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAGEST: gi|162195731|gb|FC371122.1|FC371122
genomic: TGCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATGgttagcattc ... gatttgctagGTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAG
EST: GCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATG GTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAG
genomic: GCACGTCAAGCTTCTGTGTTGGCGAGGCAAGGCGGTCACCATGgttagcattc ... gatttgctagGTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAG
caattgttaggttttactgttgatgatcctcactgaggattgcatgatttgctagGTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAGAAGCACACCCTCCACAAGGTCACTCAGTACAAGAAGGGAAAGGATAGTC
tcctcac putative branch site (score: 8)
ttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcattccatccattccttctgctccggactcagtgcatttgttagttaggattatttcaaaggtgttacatcttcgatgctgctccttgtgatttggatgggacatgcaatgtcagctgtgtgaatagttgtttttggcaattgttaggttttactgttgatgatcctcactgaggattgcatgatttgctagGTGAACGTTCCGAAAACGAAGAAGTCCTTCTGTCCTGGGAAGTCGTGCAAGAAGCACACCCTCCACAAGGTCACTCAGTACAAGAAGGGAAAGGATAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG