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gtaagtctaaatttttggattctgtttgcttcaggttggcagtaatggtctgtcagttgtggaattgtactggttatcacatggatttgtcgacttattctgccctgccctgttttcggtaacctacgttcacctgcttgcagATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAGCTTTGTGCTTCCTAATCATGGAAGCTGTGAATTACGCTTCTACTTTGCT
species | Physcomitrella patens |
transcript | PP1S2_377V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATG ATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAGEST: gi|18371871|gb|BJ203473.1|BJ203473
genomic: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATGgtaagtctaa ... ctgcttgcagATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAG
EST: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATG ATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAGEST: gi|162255178|gb|FC431488.1|FC431488
genomic: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATGgtaagtctaa ... ctgcttgcagATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAG
EST: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATG ATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAGEST: gi|18373321|gb|BJ204915.1|BJ204915
genomic: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATGgtaagtctaa ... ctgcttgcagATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAG
EST: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATG ATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAGEST: gi|100427783|gb|BY977671.1|BY977671
genomic: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATGgtaagtctaa ... ctgcttgcagATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAG
EST: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATG ATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAGEST: gi|18366627|gb|BJ198706.1|BJ198706
genomic: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATGgtaagtctaa ... ctgcttgcagATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAG
EST: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATG ATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAGEST: gi|18369315|gb|BJ201401.1|BJ201401
genomic: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATGgtaagtctaa ... ctgcttgcagATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAG
EST: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATG ATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGANACTCTTCGAG
genomic: ACTGGGAACATCGTTAATGTCTACTTAATTATTTGTTTATGCTTTCCATGgtaagtctaa ... ctgcttgcagATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAG
gtcgacttattctgccctgccctgttttcggtaacctacgttcacctgcttgcagATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAGCTTTGTGCTTCCTAATCATGGAAGCTGTGAATTACGCTTCTACTTTGCT
cggtaac putative branch site (score: 3)
ttcacct putative PPT
ttattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctaaatttttggattctgtttgcttcaggttggcagtaatggtctgtcagttgtggaattgtactggttatcacatggatttgtcgacttattctgccctgccctgttttcggtaacctacgttcacctgcttgcagATTTCTGTTCTTAATGTGGTTGATAACTCGCGGAATCTGAGACTCTTCGAGCTTTGTGCTTCCTAATCATGGAAGCTGTGAATTACGCTTCTACTTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG