Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT

Basic information

species Physcomitrella patens
transcript PP1S2_16V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os02g01560.1 (Oryza sativa), 3'ss of exon 1
-tttcgtttacgtcattgt-tcgcttcatttttgtggt-cggtttatcgactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
   | ||  |  ||||||| ||  |  |||  ||| || |   |   |   |   || |    |||  || ||   |   ||   ||| ||      |  |||||  | ||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||| | ||||| || |||
accttgtg-atttcattgtgtcattgtattcatgtcgtgctactctgcagttatgttgttatttgtgctgatcatttccttttcccttaccg--taataccagGCAAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os05g30530.1 (Oryza sativa), 3'ss of exon 1
tttcgtttacgtcattgttcgctt--catttttgtggtc-ggtttatcgactggattttggcctgtcatggtctcctgtattcatctttccaatct--ctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
     |||||   ||||  | |||  ||||| | |  |  || ||    |   | | |     |||  |  |||  |  |   |   | |   |||   |   ||||  | ||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||| | ||||| || |||
-----tttactgtattgcccccttttcatttctctcatttggattggttaaacgctatcaatatgtatttatcttgttaaaagaatctccttttctgcttaatagGCGAGGGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCCCCCAGCCATTGGATGCTTGACAAGCTTGGTGGAGCATTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os01g25610.1 (Oryza sativa), 3'ss of exon 1
tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgactggattt-tggcctgtcatg-gtctcctgtattcatctttccaatctctgg-cagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
      |||  |  |||| |    | |||  |  |       ||    ||  | | |||    | |      |   ||  ||| | |   | | ||||  |||||  | || |||||||||||| | ||||||||||||||||||| |||||||||||| |||||| | || || || |||
--agaattatattgttgtac-tggcttttaagaagcatcacaattctgtgagtatgtggttaataacatacttaacgttgtcaacctgttattttctgaacagGCGAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCGCCCAAGCACTGGATGCTCGACAAGCTCGGCGGAGCTTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G158584_T04 (Zea mays), 3'ss of exon 5
-tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgt-attcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
 | |   ||    ||  | |      || |   ||       |||  | |  ||  |||  | |  ||  ||  |||   ||||  ||    |      |||||| | || ||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| | || || || |||
ctgttacttttaaca--gctaatgcaatctggatgagtcacctatgaattccatactggaatctgttgcgcttttgttgatcattattattttgcaatccagGCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G469061_T01 (Zea mays), 3'ss of exon 2
-tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgt-attcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
 | |   ||    ||  | |      || |   ||       |||  |    ||  |||  | |  ||  ||  |||   ||||  ||    |      |||||| | || ||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| | ||||| || |||
ctgttacttttaaca--gctaatgcaatctggatgagtcacctatgaatgccatactggaatctgttgcgcttttgttgatcattattattttgcaatccagGCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGTGGAGCTTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G125271_T01 (Zea mays), 3'ss of exon 1
tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgac-tggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
||  |      |||||    |        ||| | |   | |    ||      |     ||||  || | | ||| ||   | |||    |      |||||| | || ||||||||||||||||||||||||||||| |||| ||| |||||||| |||||| | || || || |||
ttgagaaggaatcattccgtgaaatcaggttgcgatgcctatgataacacttgctggaatctgttgtgcttttctg-atcactgttttttttgcaatccagGCTAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCCAAGCATTGGATGCTGGACAAGCTTGGCGGAGCTTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G176641_T01 (Zea mays), 3'ss of exon 3
-tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgt-attcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
 | |   ||    ||  | |      || |   ||       |||  |    ||  |||  | |  ||  ||  |||   ||||  ||    |      |||||| | || ||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| | || || || |||
ctgttacttttaaca--gctaaagcaatctggatgagtcacctatgaatgccatactggaatctgttgcgcttttgttgatcattattattttgcaatccagGCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G158584_T05 (Zea mays), 3'ss of exon 1
-tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgt-attcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT----------------------
 | |   ||    ||  | |      || |   ||       |||  | |  ||  |||  | |  ||  ||  |||   ||||  ||    |      |||||| | || ||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| | || || || |||                      
ctgttacttttaaca--gctaatgcaatctggatgagtcacctatgaattccatactggaatctgttgcgcttttgttgatcattattattttgcaatccagGCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTGTAAGTAAAAAATATTTTCTAG

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G035017_T01 (Zea mays), 3'ss of exon 1
tttcgtttacgtcattgttcgcttcatttttg-tggtcggtttatcga--ctggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
    |||    | |      | | || |   | ||    |  |||  |  |   | |     ||||  || | |  | |  ||||  ||    |      |||||| | || ||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| | || || || |||
--ctgttacttttaacagctgatgcaatcaggatgagtcgcctatgaatgccccactcgaatctgttgtgcttttgt-tgatcattattattttgcaatccagGCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G542753_T01 (Zea mays), 3'ss of exon 5
-tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgt-attcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
 | |   ||    ||  | |      || |   ||       |||  |    ||  |||  | |  ||  ||  |||   ||||  ||    |      |||||| | || | ||||||||| |||||||||||||||||||||| ||| |||||||| |||||| | || || || |||
ctgttacttttaaca--gctaatgcaatctggatgagtcacctatgaatgccatactggaatctgttgcgcttttgttgatcattattattttgcaatccagGCTAGGGGATCGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G301096_T01 (Zea mays), 3'ss of exon 2
--tttcgtttacgtcattgttcgcttcatttttgtggtcggtttat---cgactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
  || | ||||     |  | |  |     |  ||   |  |  ||     |||||| ||||    |   | ||      |  | || ||| ||||||     ||||| | || ||||||||||| |||||||||||||||||||||| ||| ||||||||  ||||| | ||  | || |||
tgttacttttaacagctaatgcaatctgaatgagtcacctatgaatgccatactggaatttgttgcgcttttgttgatcattattatttttacaatct-----agGCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCAACAAGCTTGGCAGAGCTTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G060986_T01 (Zea mays), 3'ss of exon 5
tttcgtttacgtcattgttcgcttcatttttg-tggtcggtttatcgactggattttggcctgtcatggtctcctgt-attcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
  | |||    | |        | || | | | ||       |||  |    ||  |||  | |  ||  ||  |||   ||||  ||    |      |||||| | || ||||||||||| |||||||||||||||| ||||| ||| |||||||| || ||| | ||  | || |||
--ttgttacttttaacagctaatgcaatctggatgagtcacctatgaatgccatactggaatatgttgcgcttttgttgatcattattattttgcaatccagGCTAGGGGATTGAAGAAGCACTTGAAGAGGCTCAATGTGCCCAAGCATTGGATGCTCGATAAGCTTGGCAGAGCTTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G159228_T01 (Zea mays), 3'ss of exon 1
tttcgtttacgtcattgttcgcttcatttttg-tggtcggtttatcgactggattttggcctgtcatggtctcctgt-attcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
    |||    | |      | | || | | | ||       |||  |    ||  |||  | |  ||  ||  |||   ||||  ||    |      |||||| | || ||||||||||| |||||||| |||| ||| |||| ||| |||||||| |||||| | || || || |||
--ctgttacttttaacagctgatgcaatctggatgagtcacctatgaatgccatactggaatctgttgcgcttttgttgatcattattattttgcaatccagGCTAGGGGATTGAAGAAGCACTTGAAGAGCCTCAGTGCTCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA02G05370.1 (Glycine max), 3'ss of exon 1
-----------tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
           |||  |||   | |||||| |  |   | |||  |   |||| |  | |  ||||  | |||     |  |  || | |    | |   || | |  |||||  | || ||||||||||||||||||||||| ||||| || | ||| ||||||||||||||  |||||||||| |||
gtaatgctgagttttatttgt-ttattgttagacttgatattgaag---gtttttttaattaatttgtgtctg----agctt--tgaacttcaatatatgat-tgtaacagGCGAGAGGATTGAAGAAGCATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA14G06170.1 (Glycine max), 3'ss of exon 1
tttcgtttacgtcat-tgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgtattcatctttcca-atctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
      |  |||  | | |  | ||  || ||  |    | |  |    |   ||||    |||  | |     |  | |  | |    |    | |  |||||| | ||  | |||||||||||||| ||||||||||| || | ||| ||||||||||||||  |||||||||| |||
--aaactagcgttttgtatatgatttgttctttagacttgctgtttagattttttttattttgtgcttgagctttaaacttttgtgcttatgattgttacagGCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA02G43080.2 (Glycine max), 3'ss of exon 1
-----tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
      |  ||||  ||||||    |    | ||      |   | | |    |  ||||  |  ||     || |      ||| |  ||   | || |  |||||| | || |||||||||||| | |||||||||||||| || | ||| ||||||||||||||  |||||||||| |||
ctaccataggttttggtcatttaatgtcagacttgctgtttgaatctttttgtttaatttgtgtttg----agttttaaactttcgtgcttatga-ctgttacagGCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA03G06440.1 (Glycine max), 3'ss of exon 1
----tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
     ||||||   ||  |   | |  |  || ||  |      |  |    |   || || |||   ||  |    ||||      ||||   | | |  |||||  | || |||||||| || ||||||||||||||||| || |  |||||||||||||||||| | ||||| ||||||
aatgattcgtt-gtgtggtcagtggtgtatttgttaggaatatatggtatcttaagttgtgaccttaaattctaatttgta---gcttttctcgtgtatttcagGCGAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCTCCAAAACACTGGATGCTTGACAAGCTTGGTGGGGCCTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA16G23730.1 (Glycine max), 3'ss of exon 1
------tttcgtttacgtcattgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
      |||  |||   | | |||| | ||   | ||   |    |||||    |  |||      |||  ||  ||      ||||  ||   |   | |  |||||  | || || ||||||||| |||||||||| ||||| || | ||| ||||||||||||||  |||||||||| |||
cccgagttttatttgt-ttagtgttagatttgatattcaagattttttatt--tttaattaatttttgtt-tgagctttgaacttcaatttatga--ttgtaacagGCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA01G31270.1 (Glycine max), 3'ss of exon 1
tttcgtttacg-tcattgttcgcttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgtattc--atctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
    |  |||  | |||  | ||||  | |   || | ||  ||| || |   ||  |  ||| | |    | ||   ||    | ||||   | | |  |||||  | || || ||||| ||  |||||||||||||||| || |  || ||||||||||||||| | ||||||||||||
---ggcctacaatgattcattgcttggtgtaattgttaggaatattgagtatcttaagttctgacctcaaattctaatttgtagtttttctcctgtatttcagGCGAGAGGGTTAAAGAAACACCTGAAGAGGCTCAATGCTCCAAAACATTGGATGCTTGACAAGCTTGGTGGTGCCTTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 3'ss of exon 2
tttcgtttacgtcattgttcgct-tcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
 |  |   |  | |||     || | ||||||||  || |  | |    |   |       | | || | ||    |  |  || |     |   |  |||||| | || |||||||| |||||||||||||||||||| || | ||| ||||||||||||||| | || ||||| |||
gtatgaaaatatgatttggaactgtgatttttgtaatctgccttttttgtttttccaacatttttattg-ctgaacttcttgtcatgtgggtgcattacagGCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT

upper sequence: PP1S2_16V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: Vv06s0004g07150.t01 (Vitis vinifera), 3'ss of exon 1
-tttcgtttacgtcattgttcg--cttcatttttgtggtcggtttatcgactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
   |   ||||   | | || |    | |  ||  |  |  ||||  | | |   | |||  ||||   | |        |  |  |||        |  ||||| || || || ||||| |||||||||||||| ||||| || | ||| ||||||||||||||  | || ||||| |||
gaatgacttacaagaatatttgaatgtgaccttcata-ttagtttccccatttt-tcttgttctgttg-gttgctgaacctctacatttttggctcattacagGCACGAGGGTTAAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTTGGGGGTGCATTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67716905|gb|BJ967164.1|BJ967164
EST:     ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|208391390|gb|DC933567.1|DC933567
EST:     ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|208389935|gb|DC937766.1|DC937766
EST:     ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|67719943|gb|BJ970202.1|BJ970202
EST:     ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|18361523|gb|BJ193589.1|BJ193589
EST:     ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|162192347|gb|FC371642.1|FC371642
EST:     ACCGCCATCCCTCGCCCTCGTGCGAGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|208382233|gb|DC914852.1|DC914852
EST:     ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|162279720|gb|FC455628.1|FC455628
EST:     ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|18365612|gb|BJ197689.1|BJ197689
EST:     ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|67573065|gb|BJ945889.1|BJ945889
EST:     ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|18361547|gb|BJ193613.1|BJ193613
EST:     ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|162190584|gb|FC366222.1|FC366222
EST:     ACCGCCATCCCTCGCCCTCGTGCGAGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|67572408|gb|BJ945232.1|BJ945232
EST:     CCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: CCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|67719989|gb|BJ970248.1|BJ970248
EST:     ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
EST: gi|208400408|gb|DC908635.1|DC908635
EST:     ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATG                         GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG
genomic: ACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 49

CTCTTCGCAGCACGATTTGTGTGCACTCTCTCGCGCCGGACCGCCATCCCTCGCCCTCGTGCGGGTTCTTACTCCGCCTCGCCACGATGgtacgtcacc ... tctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactggattttggcctgtcatggtctcctgtattcatctttccaatctctggcagGCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTT
                                    tctttccaatctct  CT-rich tract
                              tattcat  TA-rich tract