1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttccaaatttgccaaacttcattgtgatggttaacattggcacttttgggaaaagaggtgcgctcttcgggatttaacataatgagattgtgttctgcagGACATGATAGCTTGTGATGTTATCAACCCAGAAGACATCGATGTCACTTTCAATTCCATTGGAGGGCTTGAGTATGTTAAGCAATCACTTCATGAATTAG
species | Physcomitrella patens |
transcript | PP1S29_307V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGATCGCGAAGCGTCTTGGCCGGCCTCTAATTCAGACCAATTCTTATGAG GACATGATAGCTTGTGATGTTATCAACCCAGAAGACATCGATGTCACTTTCEST: gi|100386867|gb|BY988136.1|BY988136
genomic: AGATCGCGAAGCGTCTTGGCCGGCCTCTAATTCAGACCAATTCTTATGAGgtaacgatta ... tgttctgcagGACATGATAGCTTGTGATGTTATCAACCCAGAAGACATCGATGTCACTTTC
EST: AGATCGCGAAGCGTCTTGGCCGGCCTCTAATTCAGACCAATTCTTATGAG GACATGATAGCTTGTGATGTTAEST: gi|100393234|gb|BY989788.1|BY989788
genomic: AGATCGCGAAGCGTCTTGGCCGGCCTCTAATTCAGACCAATTCTTATGAGgtaacgatta ... tgttctgcagGACATGATAGCTTGTGATGTTA
EST: AGATCGCGAAGCGTCTTGGCCGGCCTCTAATTCAGACCAATTCTTATGAA GACATGATAGCTTGTGATGTTATCAACCCAGAAGACATCGATGTCACTTTT
genomic: AGATCGCGAAGCGTCTTGGCCGGCCTCTAATTCAGACCAATTCTTATGAGgtaacgatta ... tgttctgcagGACATGATAGCTTGTGATGTTATCAACCCAGAAGACATCGATGTCACTTT-
ttgggaaaagaggtgcgctcttcgggatttaacataatgagattgtgttctgcagGACATGATAGCTTGTGATGTTATCAACCCAGAAGACATCGATGTCACTTTCAATTCCATTGGAGGGCTTGAGTATGTTAAGCAATCACTTCATGAATTAG
atttaac putative branch site (score: 7)
atttaacataatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccaaatttgccaaacttcattgtgatggttaacattggcacttttgggaaaagaggtgcgctcttcgggatttaacataatgagattgtgttctgcagGACATGATAGCTTGTGATGTTATCAACCCAGAAGACATCGATGTCACTTTCAATTCCATTGGAGGGCTTGAGTATGTTAAGCAATCACTTCATGAATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA