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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctcccactttgaaatcttttctgtacaatcttgggtttaggagccatcgctattcagtcatctcccacctccttactcccccttcgtgtctgtgtctgtgtctgttttctcttaatcctgtttgggttttgtggttccagAATCAATGGCCACCATGTCAATGCGAGTTGCGGCAGCAGCGGCAGCAGCGGCTGCCGTTTCATCGCCTGCCAAGTCTTCCACTGTGCACAGATTGGGCAG

Basic information

species Physcomitrella patens
transcript PP1S29_256V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67718262|gb|BJ968521.1|BJ968521
EST:     ATCCCGAACCGAACTTTACGAGTCCTGAG                         AATCAATGGCCACCATGNTCAATGCGAGTTGCGGCAGCAGCGGCAGCAGCG
genomic: ATCCCGAACCGAACTTTACGAGTCCTGAGgtttctccca ... gtggttccagAATCAATGGCCACCATG-TCAATGCGAGTTGCGGCAGCAGCGGCAGCAGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtctgtgtctgtgtctgttttctcttaatcctgtttgggttttgtggttccagAATCAATGGCCACCATGTCAATGCGAGTTGCGGCAGCAGCGGCAGCAGCGGCTGCCGTTTCATCGCCTGCCAAGTCTTCCACTGTGCACAGATTGGGCAG
                        tcttaat  putative branch site (score: 3)
                        tcttaat  TA-rich tract