1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcggaattttgaaaagcctaaggtaattcgaaggatgagcctagtgcagttttagagatcttcttagtttcggagcgatattaatttttgatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAACTATACGAAGCAGAGTCTGAGGGAGGTGGACATAGTGCGGCAAGGGGTA
species | Physcomitrella patens |
transcript | PP1S295_6V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAAEST: gi|100418471|gb|BY957435.1|BY957435
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
EST: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAAEST: gi|162152799|gb|FC329805.1|FC329805
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
EST: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAAEST: gi|100357878|gb|BY946619.1|BY946619
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
EST: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAAEST: gi|18332273|gb|BJ164286.1|BJ164286
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
EST: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAAEST: gi|67569350|gb|BJ942174.1|BJ942174
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
EST: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAAEST: gi|67570400|gb|BJ943224.1|BJ943224
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
EST: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAAEST: gi|162275561|gb|FC451303.1|FC451303
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
EST: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAAEST: gi|208399505|gb|DC908502.1|DC908502
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
EST: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAAEST: gi|67578461|gb|BJ950628.1|BJ950628
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
EST: AANCATACNTGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAAEST: gi|100447905|gb|CJ972204.1|CJ972204
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
EST: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAAEST: gi|100353517|gb|BY964846.1|BY964846
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
EST: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAAEST: gi|18357428|gb|BJ189487.1|BJ189487
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
EST: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAG GTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
genomic: AAACATACATGCGAGCGTTATCTAATCCGGATTTGGTACCATTTGCCGAGgtaattgaag ... gatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAA
tgcagttttagagatcttcttagtttcggagcgatattaatttttgatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAACTATACGAAGCAGAGTCTGAGGGAGGTGGACATAGTGCGGCAAGGGGTA
tttttc CT-rich tract
atattaatttttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcggaattttgaaaagcctaaggtaattcgaaggatgagcctagtgcagttttagagatcttcttagtttcggagcgatattaatttttgatttttcagGTCTGACCCAGTTTATTCTCGATCAAGATTCACTCTTGTTCGCGACTAGAACTATACGAAGCAGAGTCTGAGGGAGGTGGACATAGTGCGGCAAGGGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA