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...ccaattttgatctggaagacactagttgtataacatgtggcgatcgatttcagcattttaccttcagtatattgagtcgttgacaaatatgtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACGTAGAAATTCTGCATCGAGGGGGCGAGCTGGATCCTTCTCTGGGGGGAGA
species | Physcomitrella patens |
transcript | PP1S28_200V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACGEST: gi|18356871|gb|BJ188930.1|BJ188930
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACGEST: gi|18374613|gb|BJ206191.1|BJ206191
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACGEST: gi|18359451|gb|BJ191512.1|BJ191512
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACGEST: gi|18360928|gb|BJ192992.1|BJ192992
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACGEST: gi|18356760|gb|BJ188819.1|BJ188819
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACGEST: gi|18359826|gb|BJ191887.1|BJ191887
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACGEST: gi|18360963|gb|BJ193027.1|BJ193027
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACGEST: gi|18359149|gb|BJ191209.1|BJ191209
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
EST: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAG GGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
genomic: TTTGGTTGATGTTACAGGGTTTTCTGCGGGTTCTGGAGTGCAGCTACGAGgtgagttggg ... gtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACG
gatttcagcattttaccttcagtatattgagtcgttgacaaatatgtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACGTAGAAATTCTGCATCGAGGGGGCGAGCTGGATCCTTCTCTGGGGGGAGA
cgttgac putative branch site (score: 4)
agtatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaattttgatctggaagacactagttgtataacatgtggcgatcgatttcagcattttaccttcagtatattgagtcgttgacaaatatgtgaatacagGGAGTTCCTGACAAATTTCGGCTTACATGCTTGATTCTTGACGTGGATACGTAGAAATTCTGCATCGAGGGGGCGAGCTGGATCCTTCTCTGGGGGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA