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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccatatctagttctaatattgattccgtatgatagcattcaagaaacagaccgatgaattgtttgcatttgctgatttgggccgctgtaatcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGCTACTGGCCCGGGCTTTTTGCCAAGCTATGCGAAAAGAGAAGCGTTGACG

Basic information

species Physcomitrella patens
transcript PP1S28_131V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162212130|gb|FC388240.1|FC388240
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|18336644|gb|BJ168667.1|BJ168667
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|18328416|gb|BJ160421.1|BJ160421
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162204940|gb|FC380622.1|FC380622
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|208380663|gb|DC919407.1|DC919407
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162272286|gb|FC448990.1|FC448990
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162211909|gb|FC387781.1|FC387781
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162247100|gb|FC422274.1|FC422274
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162223265|gb|FC400234.1|FC400234
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|67728255|gb|BJ978514.1|BJ978514
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|67724164|gb|BJ974423.1|BJ974423
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162249364|gb|FC424008.1|FC424008
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162276648|gb|FC452226.1|FC452226
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|67726840|gb|BJ977099.1|BJ977099
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|67719997|gb|BJ970256.1|BJ970256
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|67702786|gb|BJ963019.1|BJ963019
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162249365|gb|FC424009.1|FC424009
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162229605|gb|FC404873.1|FC404873
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162212129|gb|FC388239.1|FC388239
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162237581|gb|FC413651.1|FC413651
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162275685|gb|FC451362.1|FC451362
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162223266|gb|FC400235.1|FC400235
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162241567|gb|FC414689.1|FC414689
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|208393919|gb|DC946129.1|DC946129
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|67718352|gb|BJ968611.1|BJ968611
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|67709652|gb|BJ965468.1|BJ965468
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162272285|gb|FC448989.1|FC448989
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162205764|gb|FC381002.1|FC381002
EST:     GATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: GATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|67727946|gb|BJ978205.1|BJ978205
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|67727415|gb|BJ977674.1|BJ977674
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162211908|gb|FC387780.1|FC387780
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162204941|gb|FC380623.1|FC380623
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|208348311|gb|DC905525.1|DC905525
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162205765|gb|FC381003.1|FC381003
EST:     GATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: GATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|18325231|gb|BJ157227.1|BJ157227
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162247099|gb|FC422273.1|FC422273
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162237582|gb|FC413652.1|FC413652
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|162229606|gb|FC404874.1|FC404874
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|67723728|gb|BJ973987.1|BJ973987
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|67710237|gb|BJ965900.1|BJ965900
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
EST: gi|67702998|gb|BJ963231.1|BJ963231
EST:     CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACG                         GCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC
genomic: CCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 205

GACGCAGTGGTTCTGCACCCGCTTTGCCAAAATGTCGGTCAGCGAGCTTGCCTGCACTTATGCTAGCCTCATCTTGCACGACGATGGCATCGCCATCACGgttagttctc ... atcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGCTACTGGCCCGGGCTTTTTGCCAAGCTATGCGAAAAGAGAAGCGTTGACG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacagaccgatgaattgtttgcatttgctgatttgggccgctgtaatcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGCTACTGGCCCGGGCTTTTTGCCAAGCTATGCGAAAAGAGAAGCGTTGACG
                         tgctgat  putative branch site (score: 205)
                                              tcctgtc  putative PPT
            aattgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tccatatctagttctaatattgattccgtatgatagcattcaagaaacagaccgatgaattgtttgcatttgctgatttgggccgctgtaatcctgtcagGCCGACAAGATAGCTGCTCTGGTCAAGGCTGCCAATGTGCAAGTAGAGGGCTACTGGCCCGGGCTTTTTGCCAAGCTATGCGAAAAGAGAAGCGTTGACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC